Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001804 (lpxH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001804 showshow history
Names
lpxH ybbF JW0513 ECK0517 b0524
Product
UDP-2,3-diacylglucosamine pyrophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 553218 553940 723 241
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000226
EnteroFam0001804: Trusted threshold=585.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010138 (IPR010138 UDP-2,3-diacylglucosamine hydrolase) Apr 2008
Automated Process Approved IPR004843 (IPR004843 Calcineurin-like phosphoesterase domain, apaH type) Apr 2008
Automated Process Approved IPR024654 (IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type) Jul 2018
Automated Process Approved PF12850 (PF12850 Calcineurin-like phosphoesterase superfamily domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016462 pyrophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxH Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0513 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0517 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybbF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b0524 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-2,3-diacylglucosamine pyrophosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0001804: Trusted threshold=585.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000226
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF12850 Calcineurin-like phosphoesterase superfamily domain Protein Sequence Similarity - PFAM Model Name: PF12850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type Protein Sequence Similarity - InterPro Domain: IPR024654
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010138 UDP-2,3-diacylglucosamine hydrolase Protein Sequence Similarity - InterPro Domain: IPR010138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004843 Calcineurin-like phosphoesterase domain, apaH type Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.6.1.- Published Annotation - Swiss-Prot Accession Number: P43341 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.3 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; lipid A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12666 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001804 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P43341 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P43341 Published Annotation - Swiss-Prot Accession Number: P43341 Jan 2005
Automated Process Approved db xref GeneID:949053 Published Annotation - Entrez Gene Database ID: 949053
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786735 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0009245 - lipid A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73626.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem known or putative virulence factor Published Annotation - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009245 lipid A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Person Uncurated GO biological process GO:0051701 biological process involved in interaction with host GO Traceable Author Statement - PubMed ID: 12045108
Reference: Escherichia coli 		Dec 2007
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016462 pyrophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000226 lpxH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001888 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000677 lpxH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000522 lpxH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000171 lpxH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000929 lpxH CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001431 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001098 lpxH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000853 lpxH CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001280 lpxH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001868 lpxH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005862 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017166 lpxH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003021 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001498 lpxH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299421 lpxH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001185 ybbF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002524 lpxH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000400 lpxH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006567 lpxH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000589 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005984 lpxH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000496 ybbF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003792 lpxH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009069 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009327 lpxH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008475 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076714 lpxH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000586 lpxH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000690 lpxH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005966 lpxH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007859 lpxH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000479 lpxH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005012 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001632 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010797 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008379 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005642 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005969 lpxH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005465 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007242 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009198 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006589 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007917 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005911 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005850 lpxH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006687 lpxH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024531 lpxH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007357 lpxH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005281 lpxH CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000521 lpxH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000527 lpxH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000757 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000673 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000631 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174733 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000558 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000568 lpxH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130478 lpxH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005224 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000554 ybbF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002673 lpxH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000482 ybbF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003468 lpxH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007530 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000363 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002997 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000385 lpxH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003831 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001097 lpxH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003226 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008770 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002753 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290865 lpxH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004202 ybbF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063443 lpxH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002705 lpxH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000420 lpxH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008008 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145486 lpxH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003806 lpxH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004759 lpxH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002538 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000666 lpxH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004859 lpxH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001741 lpxH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001696 lpxH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005593 lpxH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005008 lpxH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004367 lpxH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007809 lpxH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005984 lpxH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009027 lpxH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004958 lpxH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007097 lpxH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002204 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002188 lpxH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003042 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005247 lpxH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006221 lpxH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004670 lpxH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008213 lpxH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106435 lpxH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084040 lpxH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000626 lpxH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092183 lpxH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008947 lpxH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005291 lpxH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004923 lpxH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004691 lpxH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265355 CDS
Person Approved Go view Shigella boydii 227 ADV-0000453 ybbF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005848 lpxH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005223 lpxH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000302 ybbF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071439 lpxH CDS
Person Approved Go view Shigella flexneri 301 ABT-0086812 lpxH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000503 ybbF CDS
Person Approved Go view Shigella sonnei 046 ADD-0000532 lpxH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001924 VC1850 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000401 lpxH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001568 lpxH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001369 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008837 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001791 lpxH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000804 lpxH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001559 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236213 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005385 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003087 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008457 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000440 lpxH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125613 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007575 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007995 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003957 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005034 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004581 lpxH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030762 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008820 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001234 lpxH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003256 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005230 lpxH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007021 lpxH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001086 lpxH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001274 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003745 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009497 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001606 lpxH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 548218 to 558940
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001784fdrACDSforward546680548347Downstream
ABE-0285105ylbECDSforward548357549616Downstream
ABE-0001789ylbFCDSforward549627550442Downstream
ABE-0001791ybcFCDSforward550439551332Downstream
ABE-0285375repeat_regionforward551354551510Downstream
ABE-0001794purKCDScomplement551527552594Downstream
ABE-0001796purECDScomplement552591553100Downstream
ABE-0001804lpxHCDScomplement553218553940Matches
ABE-0001806ppiBCDScomplement553943554437Upstream
ABE-0001810cysSCDSforward554611555996Upstream
ABE-0285376repeat_regionforward556007556032Upstream
ABE-0001812ybcICDScomplement556032556553Upstream
ABE-0001816ybcJCDScomplement556661556873Upstream
ABE-0001818folDCDScomplement556875557741Upstream
ABE-0001825sfmACDSforward558212558754Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.