Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001818 (folD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001818 showshow history
Names
folD JW0518 ECK0522 ads b0529
Product
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 556875 557741 867 289
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000230
EnteroFam0001818: Trusted threshold=820.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000672 (IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase) Apr 2008
Automated Process Approved IPR020631 (IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain) Jul 2018
Automated Process Approved IPR020630 (IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02882 (PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain) Jul 2018
Automated Process Approved PF00763 (PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020630, IPR000672
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020631, IPR020630, IPR000672
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name folD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0518 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0522 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ads Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0529 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Automated Process Approved alternate product name bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved alternate product name methenyltetrahydrofolate dehydrogenase/cyclohydrolase Published Annotation in EcoGene - EG Number: EG10328
Reference: Escherichia coli K-12 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0001818: Trusted threshold=820.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000230
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Protein Sequence Similarity - PFAM Model Name: PF02882
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase Protein Sequence Similarity - InterPro Domain: IPR000672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR020630
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00763
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR020631
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.5.1.5 Published Annotation - Swiss-Prot Accession Number: P24186 Feb 2006
Person Approved EC number 3.5.4.9 Published Annotation - Swiss-Prot Accession Number: P24186 Feb 2006
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.17 (metabolism; central intermediary metabolism; formyl-tetrahydrofolate biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945221 Published Annotation - Entrez Gene Database ID: 945221
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786741 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001818 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10328 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24186 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24186 Published Annotation - Swiss-Prot Accession Number: P24186 Jan 2005
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Folic acid Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase; GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73631.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020630, IPR000672
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009257 10-formyltetrahydrofolate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020631, IPR020630, IPR000672
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000672
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000230 folD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000989 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000210 folD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000204 folD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000170 folD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000770 folD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002343 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001425 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129756 folD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105156 folD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104601 folD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001193 folD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003104 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001287 folD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001873 folD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005867 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017160 folD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003016 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001505 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299434 folD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001190 folD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002517 folD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000390 folD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006562 folD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000594 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005979 folD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000500 folD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003787 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009064 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009322 folD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008469 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076720 folD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000591 folD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000697 folD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005961 folD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007853 folD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000484 folD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005017 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001637 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008384 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005647 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005964 folD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005470 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007247 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009203 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006594 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007922 folD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005905 folD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005855 folD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006692 folD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024536 folD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007362 folD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005285 folD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000855 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000526 folD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000532 folD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000762 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000723 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000668 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000637 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174738 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000563 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000573 folD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130483 folD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005229 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000560 folD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002669 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001823 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000486 folD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003475 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007525 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000368 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002992 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000390 folD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003826 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001102 folD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003221 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008774 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002758 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290870 folD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004207 folD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063438 folD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002714 folD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000811 folD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000415 folD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008003 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146637 folD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003794 folD-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004766 folD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002532 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000673 folD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004866 folD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001757 folD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001712 folD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005586 folD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005015 folD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004374 folD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007816 folD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005991 folD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009034 folD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004965 folD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007104 folD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002199 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002183 folD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003035 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005254 folD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006216 folD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004677 folD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008220 folD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106443 folD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084035 folD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000633 folD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092200 folD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008940 folD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005286 folD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004930 folD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004687 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265358 folD CDS
Person Approved Go view Shigella boydii 227 ADV-0000448 folD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005843 folD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005228 folD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000307 folD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071444 folD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086817 folD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000508 folD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000527 folD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002017 VC1942 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000399 folD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006006 folD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001373 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008824 ads CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001787 ads CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000800 folD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001563 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236220 folD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005390 folD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003082 folD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008452 folD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000663 folD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124769 folD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004310 folD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006096 folD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002460 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006357 folD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004586 folD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030768 folD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007198 folD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001239 folD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003251 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005235 folD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007017 folD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001090 folD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001278 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003741 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009530 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001612 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 551875 to 562741
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001794purKCDScomplement551527552594Downstream
ABE-0001796purECDScomplement552591553100Downstream
ABE-0001804lpxHCDScomplement553218553940Downstream
ABE-0001806ppiBCDScomplement553943554437Downstream
ABE-0001810cysSCDSforward554611555996Downstream
ABE-0285376repeat_regionforward556007556032Downstream
ABE-0001812ybcICDScomplement556032556553Downstream
ABE-0001816ybcJCDScomplement556661556873Downstream
ABE-0001818folDCDScomplement556875557741Matches
ABE-0001825sfmACDSforward558212558754Upstream
ABE-0001828sfmCCDSforward558974559666Upstream
ABE-0001830sfmDCDSforward559697562300Upstream
ABE-0001832sfmHpseudogeneforward562313563319Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.