Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0001976 (pheP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0001976 showshow history
Names
pheP JW0565 ECK0568 b0576
Product
phenylalanine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 601959 603335 1377 459
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004840 (IPR004840 Amino acid permease, conserved site) Apr 2008
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Apr 2008
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Apr 2008
Automated Process Approved PF00324 (PF00324 Amino acid permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004841
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pheP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0568 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0565 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0576 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phenylalanine transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phenylalanine-specific transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name phenylalanene transport protein (APC family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00324 Amino acid permease Protein Sequence Similarity - PFAM Model Name: PF00324
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004840 Amino acid permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR004840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.13 (metabolism; building block biosynthesis; amino acids; phenylalanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.3 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Amino Acid-Polyamine-Choline (APC) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.153 (transport; substrate; phenylalanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0001976 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10708 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24207 Published Annotation - Swiss-Prot Accession Number: P24207 Jan 2005
Automated Process Approved db xref GeneID:945199 Published Annotation - Entrez Gene Database ID: 945199
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786789 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24207 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phenylalanine-specific transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009094 - L-phenylalanine biosynthetic process; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73677.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004841
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000017 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002852 pheP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000025 aroP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000019 aroP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000027 aroP CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003248 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001372 pheP CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001913 pheP CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001579 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000374 pheP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006518 pheP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000611 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005954 pheP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000518 pheP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003772 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009030 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007557 pheP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009888 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076738 pheP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000619 pheP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000725 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007444 pheP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007058 pheP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000500 pheP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005041 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001660 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010831 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008411 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005673 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005937 pheP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005497 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007274 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009230 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006621 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009598 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005877 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005881 pheP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006720 pheP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024561 pheP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007378 pheP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005304 pheP CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000571 pheP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000581 pheP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000934 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000854 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000713 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174753 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000650 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000593 pheP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130508 pheP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005253 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000578 pheP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000539 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003481 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004791 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002489 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000718 pheP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004945 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001829 pheP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001785 pheP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005510 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005044 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004401 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007842 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006018 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004186 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004990 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007184 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002173 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002159 pheP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003004 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005280 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006189 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004825 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005907 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106492 pheP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084007 pheP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000664 pheP CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092270 pheP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008905 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005266 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004956 CDS
Person Approved Go view Shigella boydii 227 ADV-0000475 pheP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005867 pheP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005072 pheP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000548 pheP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071470 pheP CDS
Person Approved Go view Shigella flexneri 301 ABT-0086837 pheP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000542 pheP CDS
Person Approved Go view Shigella sonnei 046 ADD-0000570 pheP CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009687 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001693 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 596959 to 608335
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001958cusCCDSforward595600596973Upstream
ABE-0001967cusFCDSforward597131597463Upstream
ABE-0001969cusBCDSforward597479598702Upstream
ABE-0001971cusACDSforward598714601857Upstream
ABE-0001976phePCDSforward601959603335Matches
ABE-0001978ybdGCDScomplement603416604663Downstream
ABE-0001981nfsBCDScomplement604771605424Downstream
ABE-0001986ybdFCDScomplement605518605886Downstream
ABE-0001988ybdJCDScomplement605951606199Downstream
ABE-0001992ybdKCDScomplement606265607383Downstream
ABE-0285379sokEncRNAforward607734607792Downstream
ABE-0047279hokECDSforward607836607988Downstream
ABE-0002004mobile_elementforward608007609351Downstream
ABE-0002007insL-2CDSforward608065609177Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.