Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002009 (entD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002009 showshow history
Names
entD JW5085 ECK0575 b0583
Product
phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 609459 610079 621 207

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Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008278 (IPR008278 4'-phosphopantetheinyl transferase domain) Apr 2008
Automated Process Approved IPR003542 (IPR003542 Enterobactin synthetase-like, component D) Apr 2008
Automated Process Approved IPR037143 (IPR037143 4'-phosphopantetheinyl transferase domain superfamily) Jul 2018
Automated Process Approved PF01648 (PF01648 4'-phosphopantetheinyl transferase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009239 enterobactin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009239 enterobactin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003542
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009366 enterobactin synthetase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003542
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003542
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name entD Published Sequence Analysis - PubMed ID: 2533240
Reference: Escherichia coli K-12 AB1515 		Mar 2006
Person Approved synonym ECK0575 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5085 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0583 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name enterochelin synthetase, component D Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF01648 4'-phosphopantetheinyl transferase superfamily Protein Sequence Similarity - PFAM Model Name: PF01648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037143 4'-phosphopantetheinyl transferase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR037143
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003542 Enterobactin synthetase-like, component D Protein Sequence Similarity - InterPro Domain: IPR003542
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008278 4'-phosphopantetheinyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.7.8.7 Published Annotation - Database Name: EC2GO: GO:0008897
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.7.8.- Published Annotation - Swiss-Prot Accession Number: P19925 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.14 (metabolism; building block biosynthesis; cofactor, small molecule carrier; enterochelin (enterobactin)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment a TTG start codon was suggested as a possible translation start site that would add 6 codons to the N-terminus of entD in comparison to the start site reported in the GenBank entry (GBAN:U00096.2) Published Sequence Analysis - PubMed ID: 2533240
Reference: Escherichia coli K-12 AB1515 		Mar 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P19925 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10262 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P19925 Published Annotation - Swiss-Prot Accession Number: P19925 Jan 2005
Automated Process Approved db xref GI:345297172 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945194 Published Annotation - Entrez Gene Database ID: 945194
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0002009 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function phosphopantetheinylation of EntF to activate the type 1 enterobactin synthetase Experimental - PubMed ID: 8939709
Reference: Escherichia coli K-12 		Mar 2006
Person Uncurated mutant phenotype entD::Tn5; an entD null mutant fails to grow in iron-deficient medium Experimental - PubMed ID: 2533240
Reference: Escherichia coli K-12 AB1515 		Mar 2006
Automated Process Approved note enterochelin synthetase, component D; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009239 - enterobactin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73684.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by iron; expression of entD is up-regulated in deferrated medium as determined by RNA dot-blot hybridization Experimental - PubMed ID: 2533240
Reference: Escherichia coli K-12 AB1515 		Mar 2006
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009239 enterobactin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003542
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009239 enterobactin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009366 enterobactin synthetase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003542
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016780 phosphotransferase activity, for other substituted phosphate groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003542
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032314 ybtD CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001280 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001602 entD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001878 entD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005348 entD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001927 entD CDS
Ortholog
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303128 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000366 entD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006508 entD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000618 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005943 entD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000525 entD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003764 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009020 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007547 entD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009879 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076744 entD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000629 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000735 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007453 entD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007048 entD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000508 entD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005048 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001669 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010840 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008420 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005683 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005928 entD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005506 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007282 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009239 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006629 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009608 entD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005867 entD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005889 entD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006729 entD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024570 entD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007386 entD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005312 entD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000879 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000578 entD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000589 entD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000924 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000845 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000731 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000663 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174761 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000658 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000600 entD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130516 entD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005262 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000585 entD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000603 entD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001705 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000728 entD CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002150 entD CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0106510 entD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083998 entD CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092313 entD CDS
Person Approved Go view Shigella boydii 227 ADV-0000481 entD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005881 entD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000573 entD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071481 entD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086849 entD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000559 entD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000576 entD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000844 VC0780 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003266 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007604 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003621 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003002 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003414 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 604459 to 615079
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0001978ybdGCDScomplement603416604663Downstream
ABE-0001981nfsBCDScomplement604771605424Downstream
ABE-0001986ybdFCDScomplement605518605886Downstream
ABE-0001988ybdJCDScomplement605951606199Downstream
ABE-0001992ybdKCDScomplement606265607383Downstream
ABE-0285379sokEncRNAforward607734607792Downstream
ABE-0047279hokECDSforward607836607988Downstream
ABE-0002004mobile_elementforward608007609351Downstream
ABE-0002007insL-2CDSforward608065609177Downstream
ABE-0002009entDCDScomplement609459610079Matches
ABE-0285380repeat_regionforward610117610214Upstream
ABE-0002014fepACDScomplement610254612494Upstream
ABE-0002019fesCDSforward612815613939Upstream
ABE-0285032ybdZCDSforward613942614160Upstream
ABE-0002021entFCDSforward614157618038Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.