Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002025 (fepC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002025 showshow history
Names
fepC JW0580 ECK0581 b0588
Product
ATP-binding component of an ABC superfamily iron-enterobactin transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 619384 620199 816 272
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000231
EnteroFam0002025: Trusted threshold=729.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fepC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0581 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0580 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0588 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily iron-enterobactin transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name ferric enterobactin transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ATP-binding component of ferric enterobactin transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name iron-enterobactin transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002025: Trusted threshold=729.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000231
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.7 (cell processes; adaptation to stress; Fe aquisition) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.56 (transport; substrate; ferric enterobactin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P23878 Published Annotation - Swiss-Prot Accession Number: P23878 Jan 2005
Automated Process Approved db xref GeneID:945201 Published Annotation - Entrez Gene Database ID: 945201
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786803 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23878 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002025 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10295 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype fepC::Tn5 (kan): no coordinate information; a fepC null mutant is unable to grow under low iron conditions and is negative in an iron uptake assay Experimental - PubMed ID: 1787794
Reference: Escherichia coli K-12 		Oct 2007
Automated Process Approved note ATP-binding component of ferric enterobactin transport; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006826 - iron ion transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73689.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237648 ysuD CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120370 ysuD CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032369 ysuD CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001617 ysuD CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002649 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001737 fepC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001938 fepC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001829 fepC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001925 fepC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001112 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001409 fepC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001933 fepC_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005962 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019148 cbuC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002894 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001633 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000505 cbrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000360 fepC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006501 fepC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000624 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005936 fepC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000530 fepC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003756 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009013 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007540 fepC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007633 FepC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076751 fepC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000637 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000742 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007459 fepC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007041 fepC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000514 fepC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005055 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001676 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010847 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008427 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005690 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005921 fepC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005513 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007289 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009246 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006636 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009615 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005860 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005896 fepC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006736 fepC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024576 fepC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007392 fepC_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005320 fepC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000887 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000583 fepC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000595 fepC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000917 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000838 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000737 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000670 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000665 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000607 fepC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130521 fepC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005269 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000592 fepC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000608 fepC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003538 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006127 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003523 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002210 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008256 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007420 fepC CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063079 cbrD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004115 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004024 cbrD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003179 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006306 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147342 fepC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004807 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002465 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000734 fepC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004962 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001881 fepC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001834 fepC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005487 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005067 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004424 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007858 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006040 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004209 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005013 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007200 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002159 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002144 fepC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002986 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005303 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006173 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004838 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005920 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106525 fepC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083992 fepC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000689 fepC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092333 fepC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008887 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005244 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004979 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002273 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267317 hmuV CDS
Person Approved Go view Shigella boydii 227 ADV-0000487 fepC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005887 fepC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000582 fepC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071490 fepC CDS
Person Approved Go view Shigella flexneri 301 ABT-0255923 fepC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000568 fepC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000582 fepC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000843 VC0779 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002289 fepC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003666 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010398 fepC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002017 fepC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001867 fepC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003813 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237648 ysuD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007306 fepC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001007 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005661 fepC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001818 ysuD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120370 ysuD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005667 fepC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004377 fepC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000886 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008957 fepC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004916 fepC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032369 ysuD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007769 fepC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002942 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001727 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006583 fepC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006427 fepC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001617 ysuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001964 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003015 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009803 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001720 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20206mutantTn5 InsertionRequest the StrainABE-0002025fepCfepC::Tn5KAN-2 at position 727 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 614384 to 625199
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002021entFCDSforward614157618038Downstream
ABE-0002023fepECDSforward618254619387Overlaps Downstream
ABE-0002025fepCCDScomplement619384620199Matches
ABE-0002027fepGCDScomplement620196621188Overlaps Upstream
ABE-0002031fepDCDScomplement621185622189Upstream
ABE-0002036entSCDSforward622300623550Upstream
ABE-0002038fepBCDScomplement623554624510Upstream
ABE-0002047entCCDSforward624885626060Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.