Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002031 (fepD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002031 showshow history
Names
fepD JW0582 ECK0583 b0590
Product
membrane component of an ABC superfamily iron-enterobactin transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 621185 622189 1005 335
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000232
EnteroFam0002031: Trusted threshold=748.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000522 (IPR000522 ABC transporter, permease protein, BtuC-like) Apr 2008
Automated Process Approved IPR037294 (IPR037294 ABC transporter, BtuC-like) Jul 2018
Automated Process Approved PF01032 (PF01032 FecCD transport family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fepD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0582 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0583 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0590 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily iron-enterobactin transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name ferric enterobactin (enterochelin) transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name iron-enterobactin transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name ferric enterobactin transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002031: Trusted threshold=748.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000232
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000522 ABC transporter, permease protein, BtuC-like Protein Sequence Similarity - InterPro Domain: IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01032 FecCD transport family Protein Sequence Similarity - PFAM Model Name: PF01032
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037294 ABC transporter, BtuC-like Protein Sequence Similarity - InterPro Domain: IPR037294
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.56 (transport; substrate; ferric enterobactin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.7 (cell processes; adaptation to stress; Fe aquisition) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945214 Published Annotation - Entrez Gene Database ID: 945214
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P23876 Published Annotation - Swiss-Prot Accession Number: P23876 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23876 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786805 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002031 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10296 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated mutant phenotype fepD::Tn5 (kan): no coordinate information; a fepD null mutant is unable to grow under low iron conditions and is negative in an iron uptake assay Experimental - PubMed ID: 1787794
Reference: Escherichia coli K-12 		Oct 2007
Automated Process Approved note ferric enterobactin (enterochelin) transport; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006826 - iron ion transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73691.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation regulated by iron; expression of fepD is down-regulated under high iron conditions, as determined by primer extension analysis Experimental - PubMed ID: 1838574
Reference: Escherichia coli K-12 		Oct 2007
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237658 ysuB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120384 ysuB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032367 ysuB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001619 ysuB CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002647 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001685 fepD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002134 fepD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002437 fepD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002129 fepD CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001114 fepD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001411 fepD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001935 fepD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005965 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019146 cbuD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002892 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001635 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000506 cbrB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000358 fepD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006499 fepD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000626 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005934 fepD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000532 fepD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003754 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009009 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007538 fepD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007631 FepD CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076753 fepD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000639 fepD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000744 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007461 fepD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007039 fepD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000516 fepD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005057 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001678 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010849 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008429 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005692 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005919 fepD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005515 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007291 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009248 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006638 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009617 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005858 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005898 fepD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006738 fepD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024578 fepD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007394 fepD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005322 fepD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000889 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000585 fepD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000597 fepD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000915 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000836 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000739 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000672 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174771 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000667 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000609 fepD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130523 fepD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005271 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000594 fepD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000610 fepD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003540 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006130 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003521 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002212 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008254 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007418 fepD CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063081 cbrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001675 cbrB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004026 cbrB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003177 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006302 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147338 fepD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004809 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002461 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000736 fepD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004964 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001890 fepD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001843 fepD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005485 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005069 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004426 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007860 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006042 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004211 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005015 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007202 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002157 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002142 fepD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002984 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005305 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006171 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004840 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005922 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106531 fepD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083990 fepD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000691 fepD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092338 fepD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008885 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005242 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004981 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002275 CDS
Person Approved Go view Shigella boydii 227 ADV-0000489 fepD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005889 fepD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000584 fepD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071492 fepD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086857 fepD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000570 fepD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000584 fepD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000841 VC0777 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002287 fepD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003668 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010391 fepD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002019 fepD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001865 fepD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003815 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237658 ysuB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007304 fepD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001009 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005663 fepD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001820 ysuB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120384 ysuB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005669 fepD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004375 fepD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000888 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008959 fepD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004914 fepD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032367 ysuB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007767 fepD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002939 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001724 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006581 fepD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006425 fepD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001619 ysuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001966 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003012 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009819 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001722 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 616185 to 627189
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002021entFCDSforward614157618038Downstream
ABE-0002023fepECDSforward618254619387Downstream
ABE-0002025fepCCDScomplement619384620199Downstream
ABE-0002027fepGCDScomplement620196621188Overlaps Downstream
ABE-0002031fepDCDScomplement621185622189Matches
ABE-0002036entSCDSforward622300623550Upstream
ABE-0002038fepBCDScomplement623554624510Upstream
ABE-0002047entCCDSforward624885626060Upstream
ABE-0002049entECDSforward626070627680Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.