Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002049 (entE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002049 showshow history
Names
entE JW0586 ECK0587 b0594
Product
enterobactin synthetase component E
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 626070 627680 1611 537
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000233
EnteroFam0002049: Trusted threshold=1241.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011963 (IPR011963 2,3-dihydroxybenzoate-AMP ligase) Apr 2008
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Apr 2008
Automated Process Approved IPR025110 (IPR025110 AMP-binding enzyme, C-terminal domain) Jul 2018
Automated Process Approved PF00501 (PF00501 AMP-binding enzyme) Jul 2018
Automated Process Approved PF13193 (PF13193 AMP-binding enzyme C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019184 nonribosomal peptide biosynthetic process GO Inferred from Direct Assay - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Automated Process Uncurated GO biological process GO:0019290 siderophore biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011963
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008668 (2,3-dihydroxybenzoyl)adenylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011963
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name entE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0587 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0586 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0594 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product enterobactin synthetase component E Experimental - PubMed ID: 9485415
Reference: Escherichia coli 		Oct 2021
Person Approved alternate product name 2,3-dihydroxybenzoate-AMP ligase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Protein Family
Person Approved EnteroFam EnteroFam0002049: Trusted threshold=1241.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000233
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011963 2,3-dihydroxybenzoate-AMP ligase Protein Sequence Similarity - InterPro Domain: IPR011963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13193 AMP-binding enzyme C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF13193
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00501 AMP-binding enzyme Protein Sequence Similarity - PFAM Model Name: PF00501
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR025110 AMP-binding enzyme, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR025110
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.3.1.- Published Annotation - Swiss-Prot Accession Number: P10378 Feb 2006
Person Approved EC number 2.7.7.58 Published Annotation - Swiss-Prot Accession Number: P10378 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.9 (information transfer; protein related; non-ribosomal peptide synthetase) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.14 (metabolism; building block biosynthesis; cofactor, small molecule carrier; enterochelin (enterobactin)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947426 Published Annotation - Entrez Gene Database ID: 947426
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P10378 Published Annotation - Swiss-Prot Accession Number: P10378 Jan 2005
Automated Process Approved db xref GI:1786810 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10378 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002049 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10263 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function acylates EntB with 2,3-dihydroxybenzoate or salicylate Experimental - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Enterochelin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved function nonribosomal peptide synthetase, produces enterobactin with entB and entE Experimental - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Automated Process Approved note 2,3-dihydroxybenzoate-AMP ligase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009239 - enterobactin biosynthetic process; GO_process: GO:0019184 - nonribosomal peptide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73695.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved subfeatures contains adenylation (A) domain at amino acids 5-528 which is predicted to be specific for 2,3-dihydroxybenzoate Unpublished Sequence Analysis - Author Name, Email; Comment: Brad Anderson, anderson@svm.vetmed.wisc.edu; http://nii.btisnet.ac.in/~zeeshan/webpages/nrpsall.html
Reference: Yersinia pestis KIM 		May 2006
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019184 nonribosomal peptide biosynthetic process GO Inferred from Direct Assay - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Automated Process Uncurated GO biological process GO:0019290 siderophore biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011963
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008668 (2,3-dihydroxybenzoyl)adenylate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011963
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238214 ybtE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121581 ybtE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032123 ybtE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001664 ybtE CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000081 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000935 entE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001868 entE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001387 entE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002405 entE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000846 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004119 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001415 entE_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001939 entE_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005953 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018255 cbsE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002900 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000354 entE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006495 entE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000630 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005930 entE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000536 entE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003750 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009004 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007534 entE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007627 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076757 entE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000643 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000748 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007465 entE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007035 entE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000520 entE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005061 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001682 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010853 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008433 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005696 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005915 entE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005519 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007295 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009252 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006642 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009621 entE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005854 entE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005902 entE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006742 entE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024582 entE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007398 entE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005326 entE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000893 entE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000589 entE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000601 entE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000911 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000831 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000744 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000676 entE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174775 entE CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000671 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000613 entE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130527 entE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005275 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000598 entE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000614 entE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003544 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003517 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002216 entE CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008250 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007414 entE CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060694 entE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000317 entE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002455 entE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002907 entE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005002 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002642 irp5 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004813 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002457 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000741 entE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004968 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001903 entE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001855 entE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005481 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005073 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004430 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007864 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006046 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004215 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005019 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007206 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002153 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002138 entE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002980 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005309 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006167 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004844 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005926 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106538 entE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083986 entE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000695 entE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092358 entE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008881 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005238 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004985 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000641 CDS
Person Approved Go view Shigella boydii 227 ADV-0000493 entE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005893 entE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005087 entE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000588 entE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071496 entE CDS
Person Approved Go view Shigella flexneri 301 ABT-0255924 entE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000574 entE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000588 entE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000836 VC0772 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007554 irp5 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002023 irp5_1 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238214 ybtE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006207 ybtE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001554 ybtE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004385 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001520 ybtE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121581 ybtE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007355 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005517 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002913 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009499 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032123 ybtE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006088 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001458 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007284 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001664 ybtE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002026 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009835 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001726 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20210mutantTn5 InsertionRequest the StrainABE-0002049entEentE::Tn5KAN-2 at position 180 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 621070 to 632680
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002027fepGCDScomplement620196621188Upstream
ABE-0002031fepDCDScomplement621185622189Upstream
ABE-0002036entSCDSforward622300623550Upstream
ABE-0002038fepBCDScomplement623554624510Upstream
ABE-0002047entCCDSforward624885626060Upstream
ABE-0002049entECDSforward626070627680Matches
ABE-0002052entBCDSforward627694628551Downstream
ABE-0002054entACDSforward628551629297Downstream
ABE-0002057entHCDSforward629300629713Downstream
ABE-0002061cstACDSforward629894631999Downstream
ABE-0285381repeat_regionforward632115632148Downstream
ABE-0285033ybdDCDSforward632182632379Downstream
ABE-0002065hcxACDScomplement632389633477Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.