Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002052 (entB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002052 showshow history
Names
entB entG JW0587 ECK0588 b0595
Product
isochorismatase/enterobactin synthetase aryl carrier protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 627694 628551 858 286
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006163 (IPR006163 (DEPRECATED) Phosphopantetheine-binding) Apr 2008
Automated Process Approved IPR000868 (IPR000868 Isochorismatase-like) Apr 2008
Automated Process Approved IPR003881 (IPR003881 (DEPRECATED) Isochorismatase, N-terminal) Apr 2008
Automated Process Approved IPR009081 (IPR009081 Phosphopantetheine binding ACP domain) Jul 2018
Automated Process Approved IPR016291 (IPR016291 Isochorismatase) Jul 2018
Automated Process Approved IPR036380 (IPR036380 Isochorismatase-like superfamily) Jul 2018
Automated Process Approved IPR036736 (IPR036736 ACP-like superfamily) Jul 2018
Automated Process Approved PF00857 (PF00857 Isochorismatase family) Jul 2018
Automated Process Approved PF00550 (PF00550 Phosphopantetheine attachment site) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009239 enterobactin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019184 nonribosomal peptide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0019184 nonribosomal peptide biosynthetic process GO Inferred from Direct Assay - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008908 isochorismatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006163
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name entB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym entG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0587 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0588 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0595 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product isochorismatase/enterobactin synthetase aryl carrier protein Experimental - PubMed ID: 9214294
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name bifunctional: isochorismatase (N-terminal); 2,3-dihydro-2,3-dihydroxybenzoate synthetase (C-terminal), component of the enterobactin synthase multienzyme complex Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 2,3-dihydro-2,3-dihydroxybenzoate synthetase Experimental - PubMed ID: 2139796
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name Enterobactin synthetase component B Experimental - PubMed ID: 9485415
Reference: Escherichia coli 		Mar 2007
Protein Family
Automated Process Approved protein family PF00857 Isochorismatase family Protein Sequence Similarity - PFAM Model Name: PF00857
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036380 Isochorismatase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036736 ACP-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009081 Phosphopantetheine binding ACP domain Protein Sequence Similarity - InterPro Domain: IPR009081
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016291 Isochorismatase Protein Sequence Similarity - InterPro Domain: IPR016291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00550 Phosphopantetheine attachment site Protein Sequence Similarity - PFAM Model Name: PF00550
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003881 (DEPRECATED) Isochorismatase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR003881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006163 (DEPRECATED) Phosphopantetheine-binding Protein Sequence Similarity - InterPro Domain: IPR006163
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000868 Isochorismatase-like Protein Sequence Similarity - InterPro Domain: IPR000868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.3.2.1 Published Annotation - Swiss-Prot Accession Number: P0ADI4 Feb 2006
Person Uncurated MultiFun 2.3.9 (information transfer; protein related; non-ribosomal peptide synthetase) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.14 (metabolism; building block biosynthesis; cofactor, small molecule carrier; enterochelin (enterobactin)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786811 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946178 Published Annotation - Entrez Gene Database ID: 946178
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ADI4 Published Annotation - Swiss-Prot Accession Number: P0ADI4 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ADI4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002052 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10260 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function nonribosomal peptide synthetase, produces enterobactin with entB and entE Experimental - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Enterochelin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated modification phoshpopantetheinylated by EntD Experimental - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Person Uncurated modification acylated by EntE with 2,3-dihydroxybenzoate or salicylate Experimental - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Automated Process Approved note 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009239 - enterobactin biosynthetic process; GO_process: GO:0019184 - nonribosomal peptide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73696.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subfeatures contains thiolation (T) domain at amino acids 223-280 Unpublished Sequence Analysis - Author Name, Email; Comment: Brad Anderson, anderson@svm.vetmed.wisc.edu; http://nii.btisnet.ac.in/~zeeshan/webpages/nrpsall.html
Reference: Yersinia pestis KIM 		May 2006
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019184 nonribosomal peptide biosynthetic process GO Inferred from Direct Assay - PubMed ID: 9485415
Reference: Escherichia coli 		May 2006
Person Uncurated GO biological process GO:0019184 nonribosomal peptide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009239 enterobactin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008908 isochorismatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003881
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006163
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001275 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002335 entB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002389 entB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001841 entB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002288 entB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001120 entB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001416 entB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001940 entB_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005952 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018254 cbsB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002901 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005318 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000353 entB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006494 entB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000631 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005929 entB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000537 entB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003749 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009003 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007533 entB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007626 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076758 entB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000644 entB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000749 dhbB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007466 entB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007034 entB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000521 entB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005062 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001683 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010854 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008434 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005697 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005914 entB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005520 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007296 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009253 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006643 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009622 entB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005853 entB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005903 entB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006743 entB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024583 entB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007399 entB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005327 entB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000894 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000590 entB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000602 entB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000910 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000830 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000745 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000677 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000672 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000614 entB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130528 entB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005276 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000599 entB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000615 entB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003545 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003516 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002217 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008249 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007413 entB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060695 entB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002884 entB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002456 entB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003185 entB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005003 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143101 entB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004814 entB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002456 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000742 entB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004969 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001906 entB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001858 entB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005480 entB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005074 entB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004431 entB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007865 entB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006047 entB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004216 entB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005020 entB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007207 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002152 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002137 entB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002979 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005310 entB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006166 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004845 entB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005927 entB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106541 entB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083985 entB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000696 entB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092361 entB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008880 entB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005237 entB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004986 entB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000640 CDS
Person Approved Go view Shigella boydii 227 ADV-0000494 entB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005894 entB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005088 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000589 entB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071497 entB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086861 entB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000575 entB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000589 entB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000835 VC0771 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002024 entB CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009839 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001727 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 622694 to 633551
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002036entSCDSforward622300623550Upstream
ABE-0002038fepBCDScomplement623554624510Upstream
ABE-0002047entCCDSforward624885626060Upstream
ABE-0002049entECDSforward626070627680Upstream
ABE-0002052entBCDSforward627694628551Matches
ABE-0002054entACDSforward628551629297Overlaps Downstream
ABE-0002057entHCDSforward629300629713Downstream
ABE-0002061cstACDSforward629894631999Downstream
ABE-0285381repeat_regionforward632115632148Downstream
ABE-0285033ybdDCDSforward632182632379Downstream
ABE-0002065hcxACDScomplement632389633477Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.