Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002084 (dsbG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002084 showshow history
Names
dsbG ybdP JW0597 ECK0598 b0604
Product
periplasmic disulfide isomerase/thiol-disulphide oxidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 637827 638573 747 249
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014678 (IPR014678 (DEPRECATED) Thiol:disulphide interchange DsbG) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR009094 (IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF13098 (PF13098 Thioredoxin-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dsbG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0597 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ybdP Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0598 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0604 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic disulfide isomerase/thiol-disulphide oxidase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name thiol:disulfide interchange protein, periplasmic Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name disulfide isomerase, thiol-disulphide oxidase, periplasmic Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name thiol:disulfide interchange protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR014678 (DEPRECATED) Thiol:disulphide interchange DsbG Protein Sequence Similarity - InterPro Domain: IPR014678
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13098 Thioredoxin-like domain Protein Sequence Similarity - PFAM Model Name: PF13098
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77202 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081762 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77202 Published Annotation - Swiss-Prot Accession Number: P77202 Jan 2005
Automated Process Approved db xref ASAP:ABE-0002084 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945224 Published Annotation - Entrez Gene Database ID: 945224
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13535 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note thiol:disulfide interchange protein; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73705.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003387 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002787 dsbG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002808 dsbG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004512 dsbG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002684 dsbG CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001423 dsbG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001951 dsbG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001525 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000342 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006484 dsbG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000641 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005919 dsbG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000546 dsbG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003739 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008991 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007524 dsbG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007615 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076768 dsbG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000654 dsbG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000761 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007476 dsbG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007023 dsbG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000531 dsbG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005072 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001693 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010864 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008444 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005707 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005904 dsbG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005530 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007306 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009263 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006653 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009632 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005843 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005913 dsbG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006753 dsbG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024592 dsbG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007409 dsbG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005337 dsbG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000904 dsbG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000599 dsbG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000612 dsbG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000900 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000820 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000755 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000687 dsbG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174787 dsbG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000682 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000624 dsbG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130537 dsbG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005286 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000609 dsbG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000651 dsbG CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060268 dsbG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000005 dsbG CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000022 dsbG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009497 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004824 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002446 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000757 dsbG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004979 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001937 dsbG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001887 dsbG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005470 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005084 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004441 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007875 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006057 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004226 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005030 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007217 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002142 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002127 dsbG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002968 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005320 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006156 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004855 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005937 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0106562 dsbG CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083975 dsbG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000707 dsbG CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092390 dsbG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008870 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005227 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004996 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071513 dsbG CDS
Person Approved Go view Shigella flexneri 301 ABT-0086873 dsbG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000591 dsbG CDS
Person Approved Go view Shigella sonnei 046 ADD-0000600 dsbG CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009891 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001740 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 632827 to 643573
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002065hcxACDScomplement632389633477Downstream
ABE-0002069ybdLCDSforward633586634746Downstream
ABE-0002071ybdMCDScomplement634747635376Downstream
ABE-0002073ybdNCDScomplement635349636569Downstream
ABE-0002077ybdOCDScomplement636716637618Downstream
ABE-0002084dsbGCDScomplement637827638573Matches
ABE-0002090ahpCCDSforward638945639508Upstream
ABE-0002093ahpFCDSforward639753641318Upstream
ABE-0002095uspGCDScomplement641439641867Upstream
ABE-0002099ybdRCDSforward642088643326Upstream
ABE-0285765yldACDScomplement643330643419Upstream
ABE-0002104rnkCDScomplement643557643967Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.