Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002114 (citG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002114 showshow history
Names
citG ybdT JW0605 ECK0606 b0613
Product
triphosphoribosyl-dephospho-CoA transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 646631 647509 879 293
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002736 (IPR002736 Triphosphoribosyl-dephospho-CoA protein) Apr 2008
Automated Process Approved IPR017551 (IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG) Jul 2018
Automated Process Approved PF01874 (PF01874 ATP:dephospho-CoA triphosphoribosyl transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006412 translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002736, IPR017551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0046917 triphosphoribosyl-dephospho-CoA synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002736, IPR017551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002736, IPR017551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name citG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK0606 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0605 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ybdT Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b0613 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product triphosphoribosyl-dephospho-CoA transferase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-Asynthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Uncurated alternate product name triphosphoribosyl-dephospho-CoA transferase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR002736 Triphosphoribosyl-dephospho-CoA protein Protein Sequence Similarity - InterPro Domain: IPR002736
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG Protein Sequence Similarity - InterPro Domain: IPR017551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Protein Sequence Similarity - PFAM Model Name: PF01874
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated EC number 2.4.2.52 Published Annotation - Swiss-Prot Accession Number: P77231
Reference: Escherichia coli K-12
Mar 2014
Person Uncurated MultiFun 2.3 (information transfer; protein related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13539 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0002114 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946395 Published Annotation - Entrez Gene Database ID: 946395
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P77231 Published Annotation - Swiss-Prot Accession Number: P77231 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77231 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786830 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved note GO_process: GO:0006412 - translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73714.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006412 translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002736, IPR017551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0046917 triphosphoribosyl-dephospho-CoA synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002736, IPR017551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002736, IPR017551
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002262 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002093 citG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002113 citG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002572 citG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001068 citG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001210 citG CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001435 citG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001966 citG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007150 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014563 citG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001815 CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0004097 citG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000334 citG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006474 citG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000648 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005909 citG CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000553 citG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003732 citG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008982 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007515 citG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007606 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076777 citG CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000664 pseudogene
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007485 citG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007014 citG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000538 citG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005082 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001705 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010874 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008454 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005718 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005894 citG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005541 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007316 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009272 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006662 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009641 citG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005833 citG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005923 citG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006764 citG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024601 citG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007416 citG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005345 citG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000911 citG CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000607 citG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000620 citG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000890 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000810 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000765 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000696 citG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174795 citG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000691 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000631 citG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130546 citG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005296 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000617 citG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001085 citG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000039 citG2 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006999 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062833 citG CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001560 citG CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000671 citG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001966 citG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006583 CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005164 mdcB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004837 citG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002433 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000769 citG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004993 citG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001979 citG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005457 citG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005097 citG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004454 citG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007888 citG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006070 citG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004239 citG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005043 citG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007230 citG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002130 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002115 citG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002954 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005333 citG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006143 citG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004868 citG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005950 citG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106594 citG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083962 citG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000721 citG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092427 citG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008857 citG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005214 citG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005009 citG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002617 citG CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0009841 citG CDS
Person Approved Go view Shigella boydii 227 ADV-0000519 citG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005924 citG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005109 citG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071523 citG CDS
Person Approved Go view Shigella flexneri 8401 BAG-0000599 citG CDS
Person Approved Go view Shigella sonnei 046 ADD-0000609 citG CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0000865 VC0801 CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003264 citG CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0007619 citG CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003616 citG CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002997 citG CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003416 citG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22711mutantTn5 InsertionRequest the StrainABE-0002114citGcitG::Tn5KAN-I-SceI at position 575 in Minus orientation ,+ pKD460Blattner Laboratory
FB22884mutantTn5 InsertionRequest the StrainABE-0002114citGcitG::Tn5(KAN-I-SceI) at position 575 in Minus orientation ,+ pKD46 0Blattner Laboratory
FB23060mutantTn5 InsertionRequest the StrainABE-0002114citGcitG::Tn5KAN-I-SceI at position 575 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 641631 to 652509
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002095uspGCDScomplement641439641867Downstream
ABE-0002099ybdRCDSforward642088643326Downstream
ABE-0285765yldACDScomplement643330643419Downstream
ABE-0002104rnkCDScomplement643557643967Downstream
ABE-0002107rnaCDScomplement644197645003Downstream
ABE-0002110citTCDScomplement645117646580Downstream
ABE-0002114citGCDScomplement646631647509Matches
ABE-0002116citXCDScomplement647484648035Overlaps Upstream
ABE-0002119citFCDScomplement648039649571Upstream
ABE-0002122citECDScomplement649582650490Upstream
ABE-0002124citDCDScomplement650487650783Upstream
ABE-0002126citCCDScomplement650798651856Upstream
ABE-0002129dpiBCDSforward652235653893Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.