Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002122 (citE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002122 showshow history
Names
citE ybdW JW0608 ECK0609 b0616
Product
citrate lyase beta subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 649582 650490 909 303
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006475 (IPR006475 Citrate lyase, beta subunit, bacteria) Apr 2008
Automated Process Approved IPR005000 (IPR005000 HpcH/HpaI aldolase/citrate lyase domain) Apr 2008
Automated Process Approved IPR011206 (IPR011206 Citrate lyase beta subunit-like) Apr 2008
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2018
Automated Process Approved PF03328 (PF03328 HpcH/HpaI aldolase/citrate lyase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006084 acetyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009346 ATP-independent citrate lyase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005000, IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008816 citryl-CoA lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name citE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0609 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0608 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ybdW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0616 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product citrate lyase beta subunit Protein Sequence Similarity - InterPro Domain: IPR006475
Reference: Escherichia coli K-12 MG1655 		Sep 2021
Person Uncurated alternate product name citrate lyase beta chain (acyl lyase subunit) Published Annotation - Swiss-Prot Accession Number: P77770 Jan 2006
Person Uncurated alternate product name citrate lyase beta chain, citryl-ACP lyase Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name citrate lyase, citryl-ACP lyase (beta) subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2021
Protein Family
Automated Process Approved protein family IPR011206 Citrate lyase beta subunit-like Protein Sequence Similarity - InterPro Domain: IPR011206
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005000 HpcH/HpaI aldolase/citrate lyase domain Protein Sequence Similarity - InterPro Domain: IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006475 Citrate lyase, beta subunit, bacteria Protein Sequence Similarity - InterPro Domain: IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03328 HpcH/HpaI aldolase/citrate lyase family Protein Sequence Similarity - PFAM Model Name: PF03328
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.3.6 Published Annotation - Swiss-Prot Accession Number: P0A9I1 Feb 2006
Person Approved EC number 4.1.3.34 Published Annotation - Swiss-Prot Accession Number: P0A9I1 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13542 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9I1 Published Annotation - Swiss-Prot Accession Number: P0A9I1 Jan 2006
Automated Process Approved db xref GeneID:945406 Published Annotation - Entrez Gene Database ID: 945406
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9I1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002122 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081764 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73717.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006084 acetyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009346 ATP-independent citrate lyase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008816 citryl-CoA lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005000, IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000104 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001964 citE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002046 citE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002118 citE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000859 citE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001213 citE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003639 citE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001438 citE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001969 citE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007153 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047010 citE_2 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047075 citE_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004716 citE CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0004100 citE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000331 citE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006471 citE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000651 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005906 citE CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000556 citE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003729 citE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008979 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007512 citE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007603 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076782 citE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000668 citE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000774 citE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007488 citE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007011 citE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000541 citE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005085 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001708 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010877 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008457 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005721 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005891 citE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005544 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007319 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009275 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006665 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009644 citE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005830 citE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005926 citE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006767 citE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024604 citE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007419 citE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005348 citE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000914 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000610 citE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000623 citE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000887 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000807 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000700 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174798 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000694 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000634 citE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130549 citE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005299 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000622 citE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001088 citE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000037 citE2 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007002 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008605 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062836 citE CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001601 citE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000674 citE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001969 citE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006579 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004840 citE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002430 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000773 citE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004996 citE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001987 citE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001933 citE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005454 citE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005100 citE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004457 citE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007891 citE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006073 citE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004242 citE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005046 citE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007233 citE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002127 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002112 citE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002951 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005336 citE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006140 citE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004871 citE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005953 citE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106599 citE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083959 citE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000724 citE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092436 citE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008854 citE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005211 citE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005012 citE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002614 citE CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0009844 citE CDS
Person Approved Go view Shigella boydii 227 ADV-0000522 citE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005927 citE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005114 citE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071526 citE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086881 citE CDS
Person Approved Go view Shigella flexneri 8401 BAG-0000602 citE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000612 citE CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0000862 VC0798 CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003261 citE CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0007626 citE CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003613 citE CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002994 citE CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003419 citE CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007272 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002470 citE CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0002122 citE lambda repressor assay Doodle - bnumber: b0616 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22713mutantTn5 InsertionRequest the StrainABE-0002122citEcitE::Tn5KAN-I-SceI at position 751 in Minus orientation ,+ pKD460Blattner Laboratory
FB23063mutantTn5 InsertionRequest the StrainABE-0002122citEcitE::Tn5KAN-I-SceI at position 499 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
FB23062mutantTn5 InsertionRequest the StrainABE-0002122citEcitE::Tn5KAN-I-SceI at position 499 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 644582 to 655490
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002107rnaCDScomplement644197645003Downstream
ABE-0002110citTCDScomplement645117646580Downstream
ABE-0002114citGCDScomplement646631647509Downstream
ABE-0002116citXCDScomplement647484648035Downstream
ABE-0002119citFCDScomplement648039649571Downstream
ABE-0002122citECDScomplement649582650490Matches
ABE-0002124citDCDScomplement650487650783Overlaps Upstream
ABE-0002126citCCDScomplement650798651856Upstream
ABE-0002129dpiBCDSforward652235653893Upstream
ABE-0002131dpiACDSforward653862654542Upstream
ABE-0285382repeat_regionforward654552654574Upstream
ABE-0002133dcuCCDScomplement654583655968Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.