Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002133 (dcuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002133 showshow history
Names
dcuC JW0616 JW0613 ECK0614 b0621
Product
anaerobic C4-dicarboxylate transport
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 654583 655968 1386 462
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004669 (IPR004669 C4-dicarboxylate anaerobic carrier) Apr 2008
Automated Process Approved IPR018385 (IPR018385 C4-dicarboxylate anaerobic carrier-like) Jul 2018
Automated Process Approved PF03606 (PF03606 C4-dicarboxylate anaerobic carrier) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dcuC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0613 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0616 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0614 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0621 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product anaerobic C4-dicarboxylate transport Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name transport of dicarboxylates Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name dicarboxylate transport protein (DcuC family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF03606 C4-dicarboxylate anaerobic carrier Protein Sequence Similarity - PFAM Model Name: PF03606
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018385 C4-dicarboxylate anaerobic carrier-like Protein Sequence Similarity - InterPro Domain: IPR018385
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004669 C4-dicarboxylate anaerobic carrier Protein Sequence Similarity - InterPro Domain: IPR004669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.61 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The C4-dicarboxylate Uptake C (DcuC) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.46 (transport; substrate; dicarboxylate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945000 Published Annotation - Entrez Gene Database ID: 945000
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABP3 Published Annotation - Swiss-Prot Accession Number: P0ABP3 Jan 2006
Automated Process Approved db xref GI:1786839 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABP3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002133 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13545 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note transport of dicarboxylates; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73722.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003431 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002504 dcuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002409 dcuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002130 dcuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002305 dcuC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001218 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003040 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001443 dcuC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001974 dcuC_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001673 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000326 dcuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006466 dcuC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000656 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005901 dcuC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000560 dcuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003724 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008973 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007507 dcuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007598 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076788 dcuC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000673 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007493 dcuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007006 dcuC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000546 dcuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005091 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001713 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010882 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008462 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005726 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005549 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007324 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009280 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006670 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009650 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005825 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005931 dcuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006772 dcuC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024609 dcuC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007424 dcuD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000919 dcuC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000615 dcuC CDS
Person Uncurated Go view Escherichia coli K-12 W3110 ADY-0000631 dcuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000882 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000846 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000705 dcuC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174803 dcuC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000699 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000639 dcuC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130554 dcuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005304 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000627 dcuC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001604 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003344 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000656 dcuC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003574 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061669 dcuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000816 dcuC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001575 dcuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004150 dcuC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006015 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004846 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002423 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000779 dcuC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005002 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002002 dcuC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001947 dcuC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005449 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005107 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004464 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007896 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006078 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004248 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005052 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007239 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002122 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002107 dcuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002944 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005341 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006133 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004876 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005958 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106608 dcuC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083954 dcuC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000730 dcuC CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092451 dcuC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008848 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005205 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005018 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004233 CDS
Person Approved Go view Shigella boydii 227 ADV-0000527 dcuC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005933 dcuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005120 dcuC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071678 dcuC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087009 dcuC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000739 dcuC CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0000619 dcuC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003555 VCA0665 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000435 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007994 dcuC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000536 dcuC_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001356 dcuC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001332 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009926 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001747 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 649583 to 660968
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002122citECDScomplement649582650490Downstream
ABE-0002124citDCDScomplement650487650783Downstream
ABE-0002126citCCDScomplement650798651856Downstream
ABE-0002129dpiBCDSforward652235653893Downstream
ABE-0002131dpiACDSforward653862654542Downstream
ABE-0285382repeat_regionforward654552654574Downstream
ABE-0002133dcuCCDScomplement654583655968Matches
ABE-0002139pagPCDSforward656557657117Upstream
ABE-0002142cspECDSforward657292657501Upstream
ABE-0002144crcBCDScomplement657555657938Upstream
ABE-0002148ybeM_1CDSpforward658031658258Upstream
ABE-0285113ybeMpseudogeneforward658031658818Upstream
ABE-0002150ybeM_2CDSpforward658255658818Upstream
ABE-0002153tatECDSforward658947659150Upstream
ABE-0002155lipACDScomplement659251660216Upstream
ABE-0002158ybeFCDScomplement660425661378Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.