Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002155 (lipA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002155 showshow history
Names
lipA lip JW0623 ECK0621 b0628
Product
lipoate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 659251 660216 966 322
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000240
EnteroFam0002155: Trusted threshold=988.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003698 (IPR003698 Lipoyl synthase) Apr 2008
Automated Process Approved IPR006638 (IPR006638 Elp3/MiaB/NifB) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Apr 2008
Automated Process Approved IPR031691 (IPR031691 Lipoyl synthase, N-terminal) Jul 2018
Automated Process Approved PF04055 (PF04055 Radical SAM superfamily) Jul 2018
Automated Process Approved PF16881 (PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009107 lipoate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009107 lipoate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003698
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016992 lipoate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name lipA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0623 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym lip Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0621 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0628 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lipoate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name lipoyl synthase, iron-sulfur protein Published Annotation in EcoGene - EG Number: EG11306
Reference: Escherichia coli K-12 MG1655 		Mar 2006
Person Uncurated alternate product name lipoate synthase, an iron-sulfur enzyme Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002155: Trusted threshold=988.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000240
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04055 Radical SAM superfamily Protein Sequence Similarity - PFAM Model Name: PF04055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Protein Sequence Similarity - PFAM Model Name: PF16881
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003698 Lipoyl synthase Protein Sequence Similarity - InterPro Domain: IPR003698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006638 Elp3/MiaB/NifB Protein Sequence Similarity - InterPro Domain: IPR006638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR031691 Lipoyl synthase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR031691
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.8.1.- Published Annotation - Swiss-Prot Accession Number: P60716 Feb 2006
Automated Process Uncurated EC number 2.8.1.8 Published Annotation - Database Name: EC2GO: GO:0016992
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.3 (metabolism; building block biosynthesis; cofactor, small molecule carrier; lipoate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11306 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786846 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P60716 Published Annotation - Swiss-Prot Accession Number: P60716 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P60716 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945227 Published Annotation - Entrez Gene Database ID: 945227
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0002155 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Biosynthesis of cofactors, carriers: Lipoate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note lipoate synthesis, sulfur insertion?; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009107 - lipoate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73729.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009107 lipoate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009107 lipoate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003698
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016992 lipoate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000240 lipA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001383 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000570 lipA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000449 lipA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000410 lipA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000485 lipA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003508 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004491 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129539 lipA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104976 lipA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104379 lipA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001232 lipA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003028 lipA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001449 lipA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001980 lipA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007951 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018340 lipA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001175 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001681 lipA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299579 lipA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001246 lipA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002440 lipA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000319 lipA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006460 lipA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000662 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005895 lipA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000564 lipA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003718 lipA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008966 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007500 lipA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007592 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076794 lipA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000680 lipA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000787 lipA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007500 lipA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007000 lipA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000552 lipA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005099 lipA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001723 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010889 lipA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008468 lipA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005733 lipA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005556 lipA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006677 lipA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009657 lipA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006779 lipA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024615 lipA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007430 lipA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005360 lipA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000925 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000622 lipA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000638 lipA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000875 lipA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000877 lipA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000839 lipA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000711 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174809 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000705 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000647 lipA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130560 lipA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005310 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000633 lipA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000718 lipA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001929 lipA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000662 lipA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003581 lipA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005631 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000415 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002943 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000447 lipA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003758 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001161 lipA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003112 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008822 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002842 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287425 lipA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004250 lipA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061543 lipA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000732 lipA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000322 lipA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002155 lipA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005859 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139682 lipA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004894 lipA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004852 lipA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002417 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000786 lipA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005008 lipA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002021 lipA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001966 lipA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005113 lipA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004470 lipA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007902 lipA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006084 lipA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004254 lipA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005058 lipA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007245 lipA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002116 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002101 lipA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002935 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005347 lipA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006127 lipA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004882 lipA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005964 lipA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106618 lipA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083948 lipA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000738 lipA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092467 lipA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008842 lipA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005024 lipA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004665 lipA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264717 lipA CDS
Person Approved Go view Shigella boydii 227 ADV-0000533 lipA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005939 lipA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005127 lipA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000616 lipA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071671 lipA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087003 lipA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000733 lipA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000629 lipA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001011 VC0943 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000335 lipA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002327 lipA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002205 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008736 lip CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003121 lip CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001185 lipA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001576 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236843 lipA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005969 lipA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003011 lipA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006565 lipA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000874 lipA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123985 lipA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004550 lipA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005282 lipA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002158 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006969 lipA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004657 lipA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030833 lipA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008579 lipA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001310 lipA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003191 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005388 lipA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006959 lipA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001145 lipA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001348 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003607 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009945 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001753 lipA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 654251 to 665216
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002131dpiACDSforward653862654542Downstream
ABE-0285382repeat_regionforward654552654574Downstream
ABE-0002133dcuCCDScomplement654583655968Downstream
ABE-0002139pagPCDSforward656557657117Downstream
ABE-0002142cspECDSforward657292657501Downstream
ABE-0002144crcBCDScomplement657555657938Downstream
ABE-0002148ybeM_1CDSpforward658031658258Downstream
ABE-0285113ybeMpseudogeneforward658031658818Downstream
ABE-0002150ybeM_2CDSpforward658255658818Downstream
ABE-0002153tatECDSforward658947659150Downstream
ABE-0002155lipACDScomplement659251660216Matches
ABE-0002158ybeFCDScomplement660425661378Upstream
ABE-0002160lipBCDScomplement661637662278Upstream
ABE-0002162ybeDCDScomplement662379662642Upstream
ABE-0002168dacACDScomplement662752663963Upstream
ABE-0002171rlpACDScomplement664102665190Upstream
ABE-0002173mrdBCDScomplement665201666313Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.