Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002168 (dacA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002168 showshow history
Names
dacA JW0627 ECK0625 pfv b0632
Product
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 662752 663963 1212 404
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR001967 (IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal) Apr 2008
Automated Process Approved IPR012907 (IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal) Apr 2008
Automated Process Approved IPR015956 (IPR015956 Penicillin-binding protein, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF07943 (PF07943 Penicillin-binding protein 5, C-terminal domain) Jul 2018
Automated Process Approved PF00768 (PF00768 D-alanyl-D-alanine carboxypeptidase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004180 carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015956
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dacA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0625 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0627 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pfv Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0632 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00768 D-alanyl-D-alanine carboxypeptidase Protein Sequence Similarity - PFAM Model Name: PF00768
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015956 Penicillin-binding protein, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015956
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07943 Penicillin-binding protein 5, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF07943
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012907
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.4.16.4 Published Annotation - Swiss-Prot Accession Number: P0AEB2 Feb 2006
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786851 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002168 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEB2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945222 Published Annotation - Entrez Gene Database ID: 945222
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10201 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEB2 Published Annotation - Swiss-Prot Accession Number: P0AEB2 Jan 2006
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73733.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004180 carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015956
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001967
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001380 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001519 dacA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001353 dacA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000023 dacA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000021 dacA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003511 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004487 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001236 dacA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003024 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001453 dacA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001983 dacA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007947 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018336 dacA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001178 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001685 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299586 dacA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001250 dacA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002437 dacA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000315 dacA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006456 dacA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000666 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005891 dacA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000568 dacA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003715 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008961 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007588 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076798 dacA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000684 dacA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000791 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007504 dacA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006996 dacA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000556 dacA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005104 dacA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010893 dacA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008472 dacA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005737 dacA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005560 dacA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010650 dacA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009292 dacA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009662 dacA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006783 dacA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024619 dacA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007433 dacA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000929 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000626 dacA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000642 dacA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000869 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000883 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000833 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000715 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174812 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000709 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000651 dacA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130564 dacA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005314 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000636 dacA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000721 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001932 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000666 dacA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003585 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005634 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000418 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002940 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000450 dacA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003755 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001164 dacA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003109 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008825 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002845 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287422 dacA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004253 dacA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061546 dacA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000723 dacA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000324 dacA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002158 dacA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005862 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004857 dacA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002413 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000790 dacA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005013 dacA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002033 dacA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001978 dacA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008755 dacA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005118 dacA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004475 dacA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007907 dacA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006090 dacA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004260 dacA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005063 dacA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007250 dacA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002112 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002097 dacA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002928 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006122 dacA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004887 dacA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005970 dacA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106626 dacA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083944 dacA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000745 dacA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092478 dacA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008837 dacA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009383 dacA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005029 dacA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004662 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264720 dacA-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0000537 dacA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006016 dacA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000620 dacA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071667 dacA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086999 dacA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000729 dacA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000633 dacA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001015 VC0947 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000333 dacA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002335 dacA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002202 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008729 dacA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003124 dacA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001188 dacA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001579 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236839 dacA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005966 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003007 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006562 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000871 dacA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123990 dacA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004547 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005285 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003164 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006972 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004660 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030837 dacA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008576 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001313 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003187 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005385 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006956 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001148 dacA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001351 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003603 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009959 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001757 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20215mutantTn5 InsertionRequest the StrainABE-0002168dacAdacA::Tn5KAN-2 at position 263 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 657752 to 668963
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002144crcBCDScomplement657555657938Downstream
ABE-0002148ybeM_1CDSpforward658031658258Downstream
ABE-0285113ybeMpseudogeneforward658031658818Downstream
ABE-0002150ybeM_2CDSpforward658255658818Downstream
ABE-0002153tatECDSforward658947659150Downstream
ABE-0002155lipACDScomplement659251660216Downstream
ABE-0002158ybeFCDScomplement660425661378Downstream
ABE-0002160lipBCDScomplement661637662278Downstream
ABE-0002162ybeDCDScomplement662379662642Downstream
ABE-0002168dacACDScomplement662752663963Matches
ABE-0002171rlpACDScomplement664102665190Upstream
ABE-0002173mrdBCDScomplement665201666313Upstream
ABE-0002178mrdACDScomplement666316668217Upstream
ABE-0002180rlmHCDScomplement668248668715Upstream
ABE-0002183rsfSCDScomplement668719669036Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.