Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002187 (nadD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002187 showshow history
Names
nadD fusB JW0634 ECK0632 ybeN b0639
Product
nicotinic acid mononucleotide adenylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 669931 670572 642 214
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000247
EnteroFam0002187: Trusted threshold=596.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004821 (IPR004821 Cytidyltransferase-like domain) Apr 2008
Automated Process Approved IPR005248 (IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR004820 (IPR004820 (DEPRECATED) Cytidylyltransferase) Apr 2008
Automated Process Approved PF01467 (PF01467 Cytidylyltransferase-like) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005248
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005248
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nadD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ybeN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym fusB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0632 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0634 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0639 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product nicotinic acid mononucleotide adenylyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name nicotinic acid mononucleotide adenylyltransferase Published Annotation - GenBank Accession Number: BA000007
Reference: Escherichia coli Sakai (EHEC) 		Sep 2007
Automated Process Approved alternate product name NaMN adenylyltransferase Published Annotation - Swiss-Prot Accession Number: P0A752
Reference: Escherichia coli K-12 		Sep 2007
Person Approved alternate product name NAMN adenylyltransferase Published Annotation - Swiss-Prot Accession Number: P52085 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002187: Trusted threshold=596.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000247
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004821 Cytidyltransferase-like domain Protein Sequence Similarity - InterPro Domain: IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004820 (DEPRECATED) Cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR004820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01467 Cytidylyltransferase-like Protein Sequence Similarity - PFAM Model Name: PF01467
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase Protein Sequence Similarity - InterPro Domain: IPR005248
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.18 Published Annotation - Swiss-Prot Accession Number: P0A752 Feb 2006
Automated Process Uncurated EC number 2.7.7.- Published Annotation - Database Name: EC2GO: GO:0016779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.7 (metabolism; building block biosynthesis; cofactor, small molecule carrier; nicotinamide adenine dinucleotide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A752 Published Annotation - Swiss-Prot Accession Number: P0A752 Jan 2006
Automated Process Approved db xref GeneID:945248 Published Annotation - Entrez Gene Database ID: 945248
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786858 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13241 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002187 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A752 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0009435 - NAD biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73740.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005248
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005248
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000247 nadD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001374 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000577 nadD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000499 nadD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000349 nadD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001058 nadD CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129716 ybeN CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104560 ybeN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003017 nadD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001461 nadD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001991 nadD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007939 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018328 nadD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001184 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001691 nadD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299608 nadD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001256 nadD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002431 nadD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000307 nadD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009279 nadD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000673 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005883 nadD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000575 nadD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003707 nadD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008952 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009104 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076806 nadD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000691 nadD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000799 nadD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007512 nadD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006987 nadD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000563 nadD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005112 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005934 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010900 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008480 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005746 nadD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005568 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010185 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009301 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010178 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006514 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010239 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010167 nadD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006791 nadD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024626 nadD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009235 nadD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005372 nadD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000936 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000633 nadD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000649 nadD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000862 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000890 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000826 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000723 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174820 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000718 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000658 nadD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130571 nadD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005322 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000644 ybeN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000727 nadD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000673 nadD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003591 nadD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005643 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000424 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002934 nadD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000456 nadD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003749 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001170 nadD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003103 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008831 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002851 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287416 nadD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004259 nadD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061552 nadD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002863 nadD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002651 nadD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002165 nadD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005871 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139700 nadD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004904 nadD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004866 nadD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002404 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000800 nadD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005022 nadD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002063 nadD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002007 nadD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008746 nadD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005126 nadD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004483 nadD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007915 nadD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006098 nadD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004269 nadD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005072 nadD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007259 nadD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002104 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002089 nadD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002918 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005362 nadD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006113 nadD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004895 nadD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005978 nadD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106643 nadD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083936 nadD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000754 nadD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092501 nadD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008828 nadD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006576 nadD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005037 nadD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004656 nadD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264727 nad CDS
Person Approved Go view Shigella boydii 227 ADV-0000544 ybeN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006009 nadD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007239 nadD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000627 ybeN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071660 nadD CDS
Person Approved Go view Shigella flexneri 301 ABT-0086992 ybeN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000722 ybeN CDS
Person Approved Go view Shigella sonnei 046 ADD-0000640 nadD CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000329 nadD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002349 nadD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002196 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008709 nadD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003130 nadD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001194 nadD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001585 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236820 nadD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005959 nadD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002998 nadD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006555 nadD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000865 nadD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124013 nadD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004540 nadD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005292 nadD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003157 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006979 nadD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004667 nadD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030843 nadD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008569 nadD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001321 nadD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003180 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005375 nadD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006933 nadD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001154 nadD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001359 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003596 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009981 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001764 nadD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 664931 to 675572
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002171rlpACDScomplement664102665190Downstream
ABE-0002173mrdBCDScomplement665201666313Downstream
ABE-0002178mrdACDScomplement666316668217Downstream
ABE-0002180rlmHCDScomplement668248668715Downstream
ABE-0002183rsfSCDScomplement668719669036Downstream
ABE-0002185cobCCDScomplement669296669907Downstream
ABE-0002187nadDCDScomplement669931670572Matches
ABE-0002192holACDScomplement670574671605Upstream
ABE-0002194lptECDScomplement671605672186Upstream
ABE-0002196leuSCDScomplement672201674783Upstream
ABE-0002199ybeLCDSforward675018675500Upstream
ABE-0002201ybeQCDScomplement675570676547Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.