Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002194 (lptE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002194 showshow history
Names
lptE rlpB JW0636 ECK0634 b0641
Product
lipopolysaccharide assembly protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 671605 672186 582 194
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000249
EnteroFam0002194: Trusted threshold=463.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR007485 (IPR007485 LPS-assembly lipoprotein LptE) Apr 2008
Automated Process Approved PF04390 (PF04390 Lipopolysaccharide-assembly) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042158 lipoprotein biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007485
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007485
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Apr 2006
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lptE Published Annotation - PubMed ID: 18375759
Reference: Escherichia coli K-12
Mar 2009
Person Approved synonym ECK0634 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym rlpB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW0636 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0641 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product lipopolysaccharide assembly protein Experimental - PubMed ID: 24938785
Reference: Escherichia coli K-12
Sep 2018
Person Approved alternate product name minor lipoprotein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name a minor lipoprotein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Automated Process Approved alternate product name rare lipoprotein B precursor Published Annotation - GenBank Accession Number: AL513382
Reference: Salmonella Typhi CT18
Sep 2007
Automated Process Approved alternate product name LPS assembly OM complex LptDE, lipoprotein component Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002194: Trusted threshold=463.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000249
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR007485 LPS-assembly lipoprotein LptE Protein Sequence Similarity - InterPro Domain: IPR007485
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF04390 Lipopolysaccharide-assembly Protein Sequence Similarity - PFAM Model Name: PF04390
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.10 (metabolism; macromolecules (cellular constituent) biosynthesis; lipoprotein) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10855 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786860 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946257 Published Annotation - Entrez Gene Database ID: 946257
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref ASAP:ABE-0002194 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0ADC1 Published Annotation - Swiss-Prot Accession Number: P0ADC1 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ADC1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function membrane; Macromolecule synthesis, modification: Lipoprotein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note a minor lipoprotein; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0042158 - lipoprotein biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73742.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042158 lipoprotein biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007485
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Apr 2006
Automated Process Uncurated GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007485
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000249 lptE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001372 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000653 lptE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000508 lptE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000348 lptE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000581 lptE CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003015 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001463 rlpB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001993 rlpB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007937 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018326 lptE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001186 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001693 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299612 rlpB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001258 rlpB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002429 rlpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000305 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009277 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000675 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005881 rlpB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000577 rlpB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003705 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008950 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009556 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009106 LptE CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076808 rlpB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000693 lptE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000801 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007514 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006985 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000565 rlpB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005114 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005936 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010902 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008482 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005748 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010765 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005570 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010183 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009303 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010180 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006516 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010237 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010165 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006793 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024628 rlpB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009233 lptE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005374 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000938 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000635 rlpB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000651 rlpB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000860 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000892 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000824 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000725 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174822 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000720 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000660 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130573 rlpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005324 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000646 rlpB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000729 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000675 rlpB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003593 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005645 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000458 rlpB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003747 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001172 rlpB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003101 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002853 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287414 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004261 rlpB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061554 rlpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000717 rlpB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000329 rlpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002167 rlpB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005873 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139703 rlpB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004868 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002402 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000802 rlpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005024 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002067 rlpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002011 rlpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008744 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005128 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004485 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007917 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006100 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004271 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005074 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007261 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002102 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002087 rlpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002916 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005364 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006111 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004897 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005980 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106645 rlpB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083934 rlpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000756 rlpB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092505 rlpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008826 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006574 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005039 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004654 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264729 CDS
Person Approved Go view Shigella boydii 227 ADV-0000546 rlpB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006007 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007241 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000629 rlpB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071658 rlpB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086990 rlpB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000720 rlpB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000642 rlpB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002351 rlpB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002194 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008703 rlpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003132 rlpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001196 rlpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001587 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236816 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005957 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002995 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006553 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000863 rlpB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124015 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004538 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005294 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003155 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006981 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004669 rlpB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030845 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008567 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001323 rlpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003177 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005373 rlpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006931 rlpB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001156 rlpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001361 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003593 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009989 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001766 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 666605 to 677186
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002178mrdACDScomplement666316668217Downstream
ABE-0002180rlmHCDScomplement668248668715Downstream
ABE-0002183rsfSCDScomplement668719669036Downstream
ABE-0002185cobCCDScomplement669296669907Downstream
ABE-0002187nadDCDScomplement669931670572Downstream
ABE-0002192holACDScomplement670574671605Overlaps Downstream
ABE-0002194lptECDScomplement671605672186Matches
ABE-0002196leuSCDScomplement672201674783Upstream
ABE-0002199ybeLCDSforward675018675500Upstream
ABE-0002201ybeQCDScomplement675570676547Upstream
ABE-0002208ybeRCDSforward676711677418Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.