Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002196 (leuS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002196 showshow history
Names
leuS JW0637 ECK0635 b0642
Product
leucyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 672201 674783 2583 861
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000250
EnteroFam0002196: Trusted threshold=2569.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002302 (IPR002302 Leucine-tRNA ligase) Apr 2008
Automated Process Approved IPR009008 (IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR002300 (IPR002300 Aminoacyl-tRNA synthetase, class Ia) Apr 2008
Automated Process Approved IPR013155 (IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Apr 2008
Automated Process Approved IPR025709 (IPR025709 Leucyl-tRNA synthetase, editing domain) Jul 2018
Automated Process Approved PF08264 (PF08264 Anticodon-binding domain of tRNA ligase) Jul 2018
Automated Process Approved PF00133 (PF00133 tRNA synthetases class I (I, L, M and V)) Jul 2018
Automated Process Approved PF13603 (PF13603 Leucyl-tRNA synthetase, Domain 2) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006429 leucyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR025709, IPR009008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002300, IPR002302, IPR009080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004823 leucine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name leuS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0635 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0637 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0642 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product leucyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name leucine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002196: Trusted threshold=2569.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000250
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002302 Leucine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Protein Sequence Similarity - InterPro Domain: IPR009008
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08264 Anticodon-binding domain of tRNA ligase Protein Sequence Similarity - PFAM Model Name: PF08264
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00133 tRNA synthetases class I (I, L, M and V) Protein Sequence Similarity - PFAM Model Name: PF00133
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13603 Leucyl-tRNA synthetase, Domain 2 Protein Sequence Similarity - PFAM Model Name: PF13603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR025709 Leucyl-tRNA synthetase, editing domain Protein Sequence Similarity - InterPro Domain: IPR025709
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002300 Aminoacyl-tRNA synthetase, class Ia Protein Sequence Similarity - InterPro Domain: IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR013155
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.1.1.4 Published Annotation - Swiss-Prot Accession Number: P07813 Feb 2006
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786861 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947497 Published Annotation - Entrez Gene Database ID: 947497
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P07813 Published Annotation - Swiss-Prot Accession Number: P07813 Jan 2005
Automated Process Approved db xref EcoGene:EG10532 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07813 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002196 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note leucine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73743.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006429 leucyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0002161 aminoacyl-tRNA editing activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR025709, IPR009008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002300, IPR002302, IPR009080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002300
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004823 leucine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000250 leuS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001371 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000127 leuS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000117 leuS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000193 leuS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000258 leuS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003520 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004478 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129714 leuS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105121 leuS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104558 leuS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001247 leuS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001464 leuS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001994 leuS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007936 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018325 leuS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001187 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001694 leuS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299616 leuS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001259 leuS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002428 leuS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000304 leuS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009276 leuS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000676 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005880 leuS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000578 leuS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003704 leuS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008949 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009555 leuS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009107 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076809 leuS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000694 leuS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000802 leuS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007515 leuS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006984 leuS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000566 leuS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005115 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005937 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010903 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008483 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005749 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010766 leuS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005571 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010182 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009304 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010181 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006517 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010236 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010164 leuS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006794 leuS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024629 leuS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009232 leuS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005375 leuS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000939 leuS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000636 leuS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000652 leuS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000859 leuS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000893 leuS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000823 leuS CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000726 leuS CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174823 leuS CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000721 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000661 leuS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130574 leuS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005325 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000647 leuS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000730 leuS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001941 leuS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000676 leuS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003594 leuS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005647 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000427 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002931 leuS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000459 leuS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003746 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001173 leuS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003100 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008834 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002854 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287413 leuS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004262 leuS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061555 leuS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000716 leuS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000330 leuS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002168 leuS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005875 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139706 leuS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004888 leuS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004869 leuS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002401 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000803 leuS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005025 leuS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002071 leuS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002015 leuS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008743 leuS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005129 leuS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004486 leuS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007918 leuS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006101 leuS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004272 leuS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005075 leuS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007262 leuS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002101 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002086 leuS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002915 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005365 leuS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006110 leuS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004898 leuS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005981 leuS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106647 leuS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083933 leuS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000757 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092508 leuS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008825 leuS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006573 leuS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005040 leuS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004653 leuS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264730 leuS CDS
Person Approved Go view Shigella boydii 227 ADV-0000547 leuS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006006 leuS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007242 leuS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000630 leuS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071657 leuS CDS
Person Approved Go view Shigella flexneri 301 ABT-0086989 leuS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000719 leuS CDS
Person Approved Go view Shigella sonnei 046 ADD-0000643 leuS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001024 VC0956 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000326 leuS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002352 leuS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002193 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008700 leuS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003133 leuS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001197 leuS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001588 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236815 leuS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005956 leuS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002994 leuS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006552 leuS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000862 leuS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124017 leuS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004537 leuS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005295 leuS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003154 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006982 leuS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004670 leuS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030846 leuS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008566 leuS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001325 leuS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003176 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005372 leuS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006930 leuS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001157 leuS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001363 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003592 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0009991 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001767 leuS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 667201 to 679783
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002178mrdACDScomplement666316668217Downstream
ABE-0002180rlmHCDScomplement668248668715Downstream
ABE-0002183rsfSCDScomplement668719669036Downstream
ABE-0002185cobCCDScomplement669296669907Downstream
ABE-0002187nadDCDScomplement669931670572Downstream
ABE-0002192holACDScomplement670574671605Downstream
ABE-0002194lptECDScomplement671605672186Downstream
ABE-0002196leuSCDScomplement672201674783Matches
ABE-0002199ybeLCDSforward675018675500Upstream
ABE-0002201ybeQCDScomplement675570676547Upstream
ABE-0002208ybeRCDSforward676711677418Upstream
ABE-0002210djlBCDSforward677415678842Upstream
ABE-0002213ybeTCDScomplement678852679406Upstream
ABE-0002220ybeUCDSforward679508680215Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.