Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002225 (hscC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002225 showshow history
Names
hscC JW0645 ECK0643 ybeW b0650
Product
Hsp70 family chaperone
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 681723 683393 1671 557
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001023 (IPR001023 (DEPRECATED) Heat shock protein Hsp70) Apr 2008
Automated Process Approved IPR013126 (IPR013126 Heat shock protein 70 family) Apr 2008
Automated Process Approved IPR029047 (IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily) Jul 2018
Automated Process Approved PF00012 (PF00012 Hsp70 protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hscC Experimental - PubMed ID: 12059959
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ybeW Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0645 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0643 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0650 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product Hsp70 family chaperone Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name putative heatshock protein (Hsp70 family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name chaperone protein Hsc62 Experimental - PubMed ID: 12059959
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001023 (DEPRECATED) Heat shock protein Hsp70 Protein Sequence Similarity - InterPro Domain: IPR001023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013126 Heat shock protein 70 family Protein Sequence Similarity - InterPro Domain: IPR013126
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00012 Hsp70 protein Protein Sequence Similarity - PFAM Model Name: PF00012
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029047
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13653 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77319 Published Annotation - Swiss-Prot Accession Number: P77319 Jan 2005
Automated Process Approved db xref ASAP:ABE-0002225 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77319 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786870 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945218 Published Annotation - Entrez Gene Database ID: 945218
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73751.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001023
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004135 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003350 hscC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003310 hscC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007432 hscC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003340 hscC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009267 hscC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005872 hscC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008941 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009545 hscC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009116 HscC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000703 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000810 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007524 hscC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006975 hscC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005125 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005948 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010914 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008494 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005760 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010334 hscC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005582 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010171 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009314 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010192 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006528 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010225 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010153 hscC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006805 hscC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024637 hscC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000644 hscC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000660 hscC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000851 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000901 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000815 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000730 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000670 hscC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130583 hscC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005336 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003367 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003422 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000166 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009506 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004368 hscC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004880 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000814 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005037 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002111 hscC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002048 hscC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008732 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005141 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004498 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006112 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004283 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005086 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007273 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002904 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005376 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006098 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000768 hscC CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092538 hscC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008814 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006559 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005052 CDS
Person Approved Go view Shigella boydii 227 ADV-0000555 ybeW CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005996 hscC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007255 hscC CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0071648 hscC pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0086982 ybeW pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000711 ybeW CDS
Person Approved Go view Shigella sonnei 046 ADD-0000651 hscC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002406 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 676723 to 688393
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002208ybeRCDSforward676711677418Downstream
ABE-0002210djlBCDSforward677415678842Downstream
ABE-0002213ybeTCDScomplement678852679406Downstream
ABE-0002220ybeUCDSforward679508680215Downstream
ABE-0002222djlCCDSforward680212681663Downstream
ABE-0285383repeat_regionforward681685681714Downstream
ABE-0002225hscCCDScomplement681723683393Matches
ABE-0002227rihACDScomplement683477684412Upstream
ABE-0002232gltLCDScomplement684530685255Upstream
ABE-0002234gltKCDScomplement685255685929Upstream
ABE-0002239gltJCDScomplement685929686669Upstream
ABE-0285767sroCncRNAcomplement686681686843Upstream
ABE-0285384repeat_regionforward686750686774Upstream
ABE-0002241gltICDScomplement686839687747Upstream
ABE-0002243is_elementforward687851689045Upstream
ABE-0285385mobile_elementcomplement687851689045Upstream
ABE-0002246insH3CDScomplement687997688977Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.