Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002232 (gltL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002232 showshow history
Names
gltL JW0647 ECK0645 b0652
Product
ATP-binding component of an ABC superfamily glutamate/aspartate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 684530 685255 726 242
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000252
EnteroFam0002232: Trusted threshold=699.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gltL Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0647 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0645 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0652 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily glutamate/aspartate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name ATP-binding protein of glutamate/aspartate transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name glutamate/aspartate transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name glutamate, aspartate ABC transporter ATP-binding subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002232: Trusted threshold=699.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000252
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.5 (metabolism; building block biosynthesis; amino acids; aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.75 (transport; substrate; glutamate/aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.1 (metabolism; building block biosynthesis; amino acids; glutamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945254 Published Annotation - Entrez Gene Database ID: 945254
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AAG3 Published Annotation - Swiss-Prot Accession Number: P0AAG3 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAG3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786872 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12663 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding protein of glutamate/aspartate transport system; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006537 - glutamate biosynthetic process; GO_process: GO:0006532 - aspartate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73753.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000252 gltL CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001369 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001417 gltL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001323 gltL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001609 gltL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001545 gltL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003522 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004476 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001250 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003011 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001467 gltL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001997 gltL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007934 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018323 gltL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001189 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001697 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299623 gltL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001261 gltL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002426 gltL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000298 gltL CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009265 gltL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000679 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005870 gltL CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000581 gltL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000181 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008939 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009543 gltL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009118 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0005450 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076812 gltL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000705 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000812 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007526 gltL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006973 gltL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000569 gltL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005127 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005950 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010916 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008496 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005762 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010336 gltL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005584 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010169 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009316 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010194 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006530 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010223 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010151 gltL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006807 gltL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024639 gltL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009229 glnQ_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005378 gltL CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000942 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000646 gltL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000662 gltL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000849 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000903 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000813 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000729 artP CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174826 artP CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000732 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000672 gltL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130585 gltL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005338 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000650 gltL CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000732 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001945 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000680 gltL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003597 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005649 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000429 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002929 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000461 gltL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003744 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001175 gltL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003098 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008836 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002856 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287411 gltL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004264 gltL CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061557 gltL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000749 gltL CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002649 gltL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002170 gltL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005877 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139708 gltL CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004247 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004883 gltL CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002398 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000817 gltL CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005040 gltL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002120 gltL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002057 gltL CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008729 gltL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005144 gltL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004501 gltL CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007926 gltL CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006115 gltL CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004286 gltL CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005089 gltL CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007276 gltL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002093 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002078 gltL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002901 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005379 gltL CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006094 gltL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004905 gltL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005988 gltL CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106662 gltL CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083925 gltL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000771 gltL CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092546 gltL CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008811 gltL CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006556 gltL CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005055 gltL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004649 CDS
Person Approved Go view Shigella boydii 227 ADV-0000557 gltL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005994 gltL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007257 gltL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071646 gltL CDS
Person Approved Go view Shigella flexneri 301 ABT-0086980 gltL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000709 gltL CDS
Person Approved Go view Shigella sonnei 046 ADD-0000653 gltL CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002354 gltL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002191 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008695 gltL CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003136 gltL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001200 gltL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001590 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236813 gltL CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005953 gltL CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002992 gltL CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006549 gltL CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000860 gltL CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124021 gltL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004534 gltL CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005298 gltL CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003151 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006985 gltL CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004673 gltL CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030848 gltL CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008563 gltL CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001327 gltL CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003174 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005369 gltL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006927 gltL CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001159 gltL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001365 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003590 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010003 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001769 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20218mutantTn5 InsertionRequest the StrainABE-0002232gltLgltL::Tn5KAN-2 at position 461 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 679530 to 690255
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002220ybeUCDSforward679508680215Downstream
ABE-0002222djlCCDSforward680212681663Downstream
ABE-0285383repeat_regionforward681685681714Downstream
ABE-0002225hscCCDScomplement681723683393Downstream
ABE-0002227rihACDScomplement683477684412Downstream
ABE-0002232gltLCDScomplement684530685255Matches
ABE-0002234gltKCDScomplement685255685929Overlaps Upstream
ABE-0002239gltJCDScomplement685929686669Upstream
ABE-0285767sroCncRNAcomplement686681686843Upstream
ABE-0285384repeat_regionforward686750686774Upstream
ABE-0002241gltICDScomplement686839687747Upstream
ABE-0002243is_elementforward687851689045Upstream
ABE-0285385mobile_elementcomplement687851689045Upstream
ABE-0002246insH3CDScomplement687997688977Upstream
ABE-0285386repeat_regionforward689264689297Upstream
ABE-0002250lntCDScomplement689343690881Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.