Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002234 (gltK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002234 showshow history
Names
gltK JW0648 ECK0646 b0653
Product
membrane component of an ABC superfamily glutamate/aspartate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 685255 685929 675 225
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000253
EnteroFam0002234: Trusted threshold=623.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR010065 (IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain) Apr 2008
Automated Process Approved IPR030205 (IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030205
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065, IPR030205
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gltK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0648 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0646 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0653 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily glutamate/aspartate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name glutamate/aspartate transport system permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name glutamate, aspartate ABC transporter permease subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name glutamate/aspartate transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002234: Trusted threshold=623.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000253
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM Protein Sequence Similarity - InterPro Domain: IPR030205
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Protein Sequence Similarity - InterPro Domain: IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.1 (metabolism; building block biosynthesis; amino acids; glutamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.75 (transport; substrate; glutamate/aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.5 (metabolism; building block biosynthesis; amino acids; aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002234 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12662 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AER5 Published Annotation - Swiss-Prot Accession Number: P0AER5 Jan 2006
Automated Process Approved db xref GI:1786873 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947354 Published Annotation - Entrez Gene Database ID: 947354
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AER5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutamate/aspartate transport system permease; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006537 - glutamate biosynthetic process; GO_process: GO:0006532 - aspartate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73754.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030205
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065, IPR030205
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000253 gltK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001368 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001054 gltK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001477 gltK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001899 gltK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001465 gltK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003523 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004475 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001251 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003010 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001468 gltK_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001998 gltK_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007933 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018322 gltK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001190 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001698 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299627 gltK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001262 gltK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002425 gltK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000297 gltK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009264 gltK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000680 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005869 gltK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000582 gltK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0000180 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008938 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009542 gltK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009119 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076813 gltK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000706 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000813 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007527 gltK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006972 gltK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000570 gltK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005128 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005951 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010917 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008497 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005763 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010337 gltK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005585 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010168 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009317 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010195 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006531 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010222 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010150 gltK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006808 gltK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024640 gltK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009228 gltK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005379 gltK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000943 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000647 gltK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000663 gltK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000848 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000904 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000812 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000730 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174827 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000733 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000673 gltK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130586 gltK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005339 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000651 gltK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000733 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001946 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000681 gltK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003598 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005650 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000430 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002928 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000462 gltK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003743 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001176 gltK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003097 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008837 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002857 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287410 gltK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004265 gltK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061558 gltK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000753 gltK CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002648 gltK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002171 gltK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005878 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139709 gltK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004246 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004884 gltK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002397 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000818 gltK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005041 gltK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002124 gltK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002061 gltK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008728 gltK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005145 gltK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004502 gltK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007927 gltK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006116 gltK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004287 gltK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005090 gltK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007277 gltK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002092 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002077 gltK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002900 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005380 gltK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006093 gltK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004906 gltK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005989 gltK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106666 gltK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083924 gltK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000772 gltK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092548 gltK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008810 gltK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006555 gltK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005056 gltK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004648 CDS
Person Approved Go view Shigella boydii 227 ADV-0000558 gltK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005993 gltK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007258 gltK CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000660 gltK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071645 gltK CDS
Person Approved Go view Shigella flexneri 301 ABT-0086979 gltK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000708 gltK CDS
Person Approved Go view Shigella sonnei 046 ADD-0000654 gltK CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002356 gltK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002190 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008692 gltK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003137 gltK_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001201 gltK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001591 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236807 gltK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005952 gltK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002991 gltK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006548 gltK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000859 gltK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124025 gltK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004533 gltK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005299 gltK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003150 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006986 gltK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004674 gltK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030849 gltK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008562 gltK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001328 gltK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003173 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005368 gltK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006926 gltK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001160 gltK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001366 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003589 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010013 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001770 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 680255 to 690929
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002222djlCCDSforward680212681663Downstream
ABE-0285383repeat_regionforward681685681714Downstream
ABE-0002225hscCCDScomplement681723683393Downstream
ABE-0002227rihACDScomplement683477684412Downstream
ABE-0002232gltLCDScomplement684530685255Overlaps Downstream
ABE-0002234gltKCDScomplement685255685929Matches
ABE-0002239gltJCDScomplement685929686669Overlaps Upstream
ABE-0285767sroCncRNAcomplement686681686843Upstream
ABE-0285384repeat_regionforward686750686774Upstream
ABE-0002241gltICDScomplement686839687747Upstream
ABE-0002243is_elementforward687851689045Upstream
ABE-0285385mobile_elementcomplement687851689045Upstream
ABE-0002246insH3CDScomplement687997688977Upstream
ABE-0285386repeat_regionforward689264689297Upstream
ABE-0002250lntCDScomplement689343690881Upstream
ABE-0002252ybeXCDScomplement690906691784Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.