Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002239 (gltJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002239 showshow history
Names
gltJ JW0649 ECK0647 b0654
Product
membrane component of an ABC superfamily glutamate and aspartate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 685929 686669 741 247
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000254
EnteroFam0002239: Trusted threshold=709; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR010065 (IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain) Apr 2008
Automated Process Approved IPR030202 (IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ) Jul 2018
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030202
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065, IPR030202
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Apr 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gltJ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW0649 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0647 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0654 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily glutamate and aspartate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2008
Person Approved alternate product name glutamate/aspartate transport system permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Automated Process Approved alternate product name glutamate and aspartate transporter subunit, membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Uncurated alternate product name glutamate/aspartate transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name glutamate, aspartate ABC transporter permease subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002239: Trusted threshold=709; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000254
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ Protein Sequence Similarity - InterPro Domain: IPR030202
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Protein Sequence Similarity - InterPro Domain: IPR010065
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated MultiFun 1.5.1.1 (metabolism; building block biosynthesis; amino acids; glutamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.5 (metabolism; building block biosynthesis; amino acids; aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.75 (transport; substrate; glutamate/aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0002239 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12661 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0AER3 Published Annotation - Swiss-Prot Accession Number: P0AER3 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AER3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1786874 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:945443 Published Annotation - Entrez Gene Database ID: 945443
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note glutamate/aspartate transport system permease; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006537 - glutamate biosynthetic process; GO_process: GO:0006532 - aspartate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73755.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0071705 nitrogen compound transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030202
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006532 aspartate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Apr 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065, IPR030202
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010065
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000348 CDS
Member
Person Approved Go view EnteroFams ADX-0000254 gltJ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001367 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001352 gltJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001445 gltJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001856 gltJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001436 gltJ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003524 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004474 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001252 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003009 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001469 gltJ_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001999 gltJ_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007932 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018321 gltJ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001191 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001699 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299630 gltJ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001263 gltJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002424 gltJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000296 gltJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009263 gltJ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000681 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005868 gltJ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000583 gltJ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 11775 [T] AMC-0003701 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008937 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009541 gltJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009120 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076814 gltJ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000707 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000814 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007528 gltJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006971 gltJ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000571 gltJ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005129 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005952 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010918 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008498 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005764 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010338 gltJ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005586 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010167 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009318 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010196 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006532 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010221 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010149 gltJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006809 gltJ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024641 gltJ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009227 glnM_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005380 gltJ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000944 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000648 gltJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000664 gltJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000847 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000905 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000811 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000731 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174828 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000734 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000674 gltJ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130587 gltJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005340 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000652 gltJ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000734 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001947 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000682 gltJ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003599 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005651 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000431 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002927 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000463 gltJ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003742 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001177 gltJ CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003096 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008838 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002858 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287409 gltJ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004266 gltJ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061559 gltJ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000752 gltJ CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002647 gltJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002172 gltJ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005879 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139712 gltJ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004245 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004885 gltJ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002396 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000819 gltJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005042 gltJ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002127 gltJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002064 gltJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008727 gltJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005146 gltJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004503 gltJ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007928 gltJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006117 gltJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004288 gltJ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005091 gltJ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007278 gltJ CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002076 gltJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002899 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005381 gltJ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006092 gltJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004907 gltJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005990 gltJ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106668 gltJ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083923 gltJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000773 gltJ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092551 gltJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008809 gltJ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006554 gltJ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005057 gltJ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004647 CDS
Person Approved Go view Shigella boydii 227 ADV-0000559 gltJ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005992 gltJ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071644 gltJ CDS
Person Approved Go view Shigella flexneri 301 ABT-0086978 gltJ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000707 gltJ CDS
Person Approved Go view Shigella sonnei 046 ADD-0000655 gltJ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002357 gltJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002189 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008689 gltJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003138 gltJ1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001202 gltJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001592 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236802 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002990 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006547 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000858 gltJ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124032 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004532 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005300 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003149 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006987 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004675 gltJ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030850 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008561 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001329 gltJ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003172 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005367 gltJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006925 gltJ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001161 gltJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001367 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003588 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010020 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001771 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 680929 to 691669
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002222djlCCDSforward680212681663Downstream
ABE-0285383repeat_regionforward681685681714Downstream
ABE-0002225hscCCDScomplement681723683393Downstream
ABE-0002227rihACDScomplement683477684412Downstream
ABE-0002232gltLCDScomplement684530685255Downstream
ABE-0002234gltKCDScomplement685255685929Overlaps Downstream
ABE-0002239gltJCDScomplement685929686669Matches
ABE-0285767sroCncRNAcomplement686681686843Upstream
ABE-0285384repeat_regionforward686750686774Upstream
ABE-0002241gltICDScomplement686839687747Upstream
ABE-0002243is_elementforward687851689045Upstream
ABE-0285385mobile_elementcomplement687851689045Upstream
ABE-0002246insH3CDScomplement687997688977Upstream
ABE-0285386repeat_regionforward689264689297Upstream
ABE-0002250lntCDScomplement689343690881Upstream
ABE-0002252ybeXCDScomplement690906691784Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.