Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002241 (gltI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002241 showshow history
Names
gltI yzzK JW5092 ECK0648 ybeJ b0655
Product
periplasmic-binding component of an ABC superfamily glutamate/aspartate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 686839 687747 909 303
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000255
EnteroFam0002241: Trusted threshold=815.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Apr 2008
Automated Process Approved PF00497 (PF00497 Bacterial extracellular solute-binding proteins, family 3) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015813 L-glutamate transmembrane transport GO Inferred from Direct Assay - PubMed ID: 1091636
Reference: Escherichia coli K-12 W3092 		Apr 2006
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Direct Assay - PubMed ID: 1091635
Reference: Escherichia coli K-12 W3092 		Apr 2006
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gltI Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0648 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yzzK Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5092 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybeJ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0655 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily glutamate/aspartate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name glutamate, aspartate binding protein, periplasmic; part of GltJKLI ABC transporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name glutamate/aspartate transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glutamate/aspartate periplasmic binding protein Published Annotation - Swiss-Prot Accession Number: P37902 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002241: Trusted threshold=815.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000255
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00497 Bacterial extracellular solute-binding proteins, family 3 Protein Sequence Similarity - PFAM Model Name: PF00497
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.1 (metabolism; building block biosynthesis; amino acids; glutamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.75 (transport; substrate; glutamate/aspartate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12700 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946938 Published Annotation - Entrez Gene Database ID: 946938
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37902 Published Annotation - Swiss-Prot Accession Number: P37902 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37902 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786876 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002241 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Amino acids Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006537 - glutamate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73756.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 9.76
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0015813 L-glutamate transmembrane transport GO Inferred from Direct Assay - PubMed ID: 1091636
Reference: Escherichia coli K-12 W3092 		Apr 2006
Person Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Direct Assay - PubMed ID: 1091635
Reference: Escherichia coli K-12 W3092 		Apr 2006
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000255 gltI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001366 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000938 gltI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001247 gltI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001898 gltI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000941 gltI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003525 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004472 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001253 ybeJ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003008 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004940 CDS
Person Uncurated Go view Citrobacter freundii ATCC 8090 [T] (AToL DRAFT) API-0005094 gltI pseudogene
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007930 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018320 gltI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001192 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001700 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299634 gltI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001265 gltI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002423 gltI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000294 gltI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009261 gltI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000682 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005866 gltI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000584 ybeJ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003700 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008935 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009539 gltI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009122 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076815 gltI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000708 ybeJ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000815 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007530 gltI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006969 gltI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000573 gltI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005130 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005953 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010920 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008500 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005766 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010340 gltI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005588 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010165 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009320 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010198 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006534 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010219 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010147 gltI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006811 gltI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024642 gltI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009225 gltI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005382 gltI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000945 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000649 gltI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000665 gltI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000846 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000906 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000810 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000732 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174829 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000735 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000675 gltI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130588 gltI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005341 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000653 gltI CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000735 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001948 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000683 gltI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003600 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005652 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000432 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002926 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000464 gltI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003741 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001178 gltI CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003095 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008839 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002859 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287408 gltI CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004267 ybeJ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061560 gltI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000750 gltI CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000331 gltI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002173 gltI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005880 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139717 gltI CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004244 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004887 gltI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002394 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000820 gltI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005044 gltI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002130 gltI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008725 gltI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005148 gltI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004505 gltI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007930 gltI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006119 gltI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004290 gltI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005093 gltI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007280 gltI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002089 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002075 gltI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002897 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005383 gltI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006090 gltI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004909 gltI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005992 gltI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106670 gltI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083922 gltI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000774 gltI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092555 gltI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008807 gltI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006552 gltI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005059 gltI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004646 CDS
Person Approved Go view Shigella boydii 227 ADV-0000560 gltI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000665 gltI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071643 gltI CDS
Person Approved Go view Shigella flexneri 301 ABT-0086977 gltI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000706 ybeJ CDS
Person Approved Go view Shigella sonnei 046 ADD-0000656 gltI CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002360 gltI CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008686 glnH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003139 gltI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001203 gltI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001593 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236801 gltI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005949 gltI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002988 gltI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006546 gltI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000857 gltI CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124039 gltI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004531 gltI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005301 gltI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000548 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006988 gltI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004676 gltI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030851 gltI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008560 gltI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001330 gltI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003170 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005366 gltI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006924 gltI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001162 gltI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001368 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003586 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010028 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001772 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 681839 to 692747
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002225hscCCDScomplement681723683393Downstream
ABE-0002227rihACDScomplement683477684412Downstream
ABE-0002232gltLCDScomplement684530685255Downstream
ABE-0002234gltKCDScomplement685255685929Downstream
ABE-0002239gltJCDScomplement685929686669Downstream
ABE-0285767sroCncRNAcomplement686681686843Overlaps Downstream
ABE-0285384repeat_regionforward686750686774Downstream
ABE-0002241gltICDScomplement686839687747Matches
ABE-0002243is_elementforward687851689045Upstream
ABE-0285385mobile_elementcomplement687851689045Upstream
ABE-0002246insH3CDScomplement687997688977Upstream
ABE-0285386repeat_regionforward689264689297Upstream
ABE-0002250lntCDScomplement689343690881Upstream
ABE-0002252ybeXCDScomplement690906691784Upstream
ABE-0002255ybeYCDScomplement691874692341Upstream
ABE-0002257ybeZCDScomplement692338693378Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.