Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002292 (asnB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002292 showshow history
Names
asnB JW0660 ECK0662 b0674
Product
asparagine synthetase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 697513 699177 1665 555
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000262
EnteroFam0002292: Trusted threshold=1162.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000583 (IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain) Apr 2008
Automated Process Approved IPR001962 (IPR001962 Asparagine synthase) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR006426 (IPR006426 Asparagine synthase, glutamine-hydrolyzing) Apr 2008
Automated Process Approved IPR017932 (IPR017932 Glutamine amidotransferase type 2 domain) Jul 2018
Automated Process Approved IPR029055 (IPR029055 Nucleophile aminohydrolases, N-terminal) Jul 2018
Automated Process Approved PF13537 (PF13537 Glutamine amidotransferase domain) Jul 2018
Automated Process Approved PF00733 (PF00733 Asparagine synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006529 asparagine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001962, IPR006426
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name asnB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0662 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0660 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0674 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product asparagine synthetase B Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002292: Trusted threshold=1162.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000262
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001962 Asparagine synthase Protein Sequence Similarity - InterPro Domain: IPR001962
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain Protein Sequence Similarity - InterPro Domain: IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017932 Glutamine amidotransferase type 2 domain Protein Sequence Similarity - InterPro Domain: IPR017932
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006426 Asparagine synthase, glutamine-hydrolyzing Protein Sequence Similarity - InterPro Domain: IPR006426
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029055 Nucleophile aminohydrolases, N-terminal Protein Sequence Similarity - InterPro Domain: IPR029055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13537 Glutamine amidotransferase domain Protein Sequence Similarity - PFAM Model Name: PF13537
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00733 Asparagine synthase Protein Sequence Similarity - PFAM Model Name: PF00733
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.5.4 Published Annotation - Swiss-Prot Accession Number: P22106 Feb 2006
Person Uncurated MultiFun 1.5.1.6 (metabolism; building block biosynthesis; amino acids; asparagine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P22106 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786889 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945281 Published Annotation - Entrez Gene Database ID: 945281
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0002292 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P22106 Published Annotation - Swiss-Prot Accession Number: P22106 Jan 2005
Automated Process Approved db xref EcoGene:EG10092 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Asparagine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process; GO_process: GO:0006529 - asparagine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73768.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated structure PDB:1CT9, mutant:C1A, whole protein, co-crystallized with AMP, L-glutamine:2.0A; X-ray diffraction Experimental - PubMed ID: 10587437
Reference: Escherichia coli K-12 		Apr 2006
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006529 asparagine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001962, IPR006426
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001359 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001438 asnB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001680 asnB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000626 asnB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001754 asnB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003532 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004465 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001261 asnB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003000 asnB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001484 asnB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002016 asnB CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0007915 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0174116 asnB pseudogene
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0001207 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001707 asnB CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0299664 asnB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001273 asnB CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002410 asnB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000278 asnB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000693 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000594 asnB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003692 asnB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008918 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009522 asnB CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009937 asnB pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076832 asnB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000725 asnB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000832 asnB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010752 asnB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006951 asnB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000587 asnB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005146 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005961 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010936 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008516 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005781 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010741 asnB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005604 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010496 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009335 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010214 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006550 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010844 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010533 asnB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006827 asnB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024656 asnB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009208 asnB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005398 asnB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000953 asnB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000656 asnB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000680 asnB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000963 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000915 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000802 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000749 asnB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000751 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000692 asnB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130605 asnB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005348 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000670 asnB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000742 asnB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001956 asnB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000697 asnB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003607 asnB CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0005668 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000439 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002872 asnB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000479 asnB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003733 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001193 asnB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003081 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008846 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002866 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291233 asnB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004282 asnB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061575 asnB CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0000740 asnB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002643 asnB CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0002181 asnB CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0005897 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004905 asnB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002378 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000838 asnB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005060 asnB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002165 asnB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002100 asnB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008711 asnB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005164 asnB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007945 asnB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005101 asnB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004307 asnB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005109 asnB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008969 asnB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002074 asnB CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002061 asnB misc_feature
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002876 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005399 asnB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008965 asnB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004925 asnB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006008 asnB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106693 asnB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083909 asnB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000793 asnB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092584 asnB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008794 asnB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006540 asnB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004636 asnB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266372 asnB-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0000579 asnB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005974 asnB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007279 asnB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000681 asnB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071626 asnB CDS
Person Approved Go view Shigella flexneri 301 ABT-0255935 asnB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000692 asnB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000674 asnB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001059 VC0991 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000116 asnB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002962 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008654 asnB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003147 asnB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001211 asnB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002221 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236776 asnB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004439 asnB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002974 asnB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006532 asnB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000849 asnB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124069 asnB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004517 asnB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005314 asnB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007002 asnB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004690 asnB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030866 asnB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008546 asnB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001346 asnB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003155 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005352 asnB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006911 asnB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001175 asnB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001383 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003571 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010064 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001779 asnB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 692513 to 704177
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002257ybeZCDScomplement692338693378Downstream
ABE-0002260miaBCDScomplement693531694955Downstream
ABE-0002265ubiFCDSforward695101696276Downstream
ABE-0285387repeat_regionforward696307696377Downstream
ABE-0002272glnXtRNAcomplement696430696504Downstream
ABE-0002274glnVtRNAcomplement696542696616Downstream
ABE-0002276metUtRNAcomplement696664696740Downstream
ABE-0002280glnWtRNAcomplement696756696830Downstream
ABE-0002284glnUtRNAcomplement696865696939Downstream
ABE-0002288leuWtRNAcomplement696963697047Downstream
ABE-0002290metTtRNAcomplement697057697133Downstream
ABE-0002292asnBCDScomplement697513699177Matches
ABE-0285388repeat_regionforward699425699522Upstream
ABE-0002296umpHCDScomplement699574700326Upstream
ABE-0002299nagCCDScomplement700374701594Upstream
ABE-0002301nagACDScomplement701603702751Upstream
ABE-0002304nagBCDScomplement702811703611Upstream
ABE-0002312nagECDSforward703944705890Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.