Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002304 (nagB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002304 showshow history
Names
nagB JW0664 ECK0666 glmD b0678
Product
glucosamine-6-phosphate deaminase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 702811 703611 801 267
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000265
EnteroFam0002304: Trusted threshold=767.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004547 (IPR004547 Glucosamine-6-phosphate isomerase) Apr 2008
Automated Process Approved IPR006148 (IPR006148 Glucosamine/galactosamine-6-phosphate isomerase) Apr 2008
Automated Process Approved IPR037171 (IPR037171 NagB/RpiA transferase-like) Jul 2018
Automated Process Approved PF01182 (PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006044 N-acetylglucosamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004342 glucosamine-6-phosphate deaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nagB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym glmD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0664 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0666 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0678 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glucosamine-6-phosphate deaminase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002304: Trusted threshold=767.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000265
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006148 Glucosamine/galactosamine-6-phosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR006148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004547 Glucosamine-6-phosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR004547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR037171 NagB/RpiA transferase-like Protein Sequence Similarity - InterPro Domain: IPR037171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Protein Sequence Similarity - PFAM Model Name: PF01182
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.99.6 Published Annotation - Swiss-Prot Accession Number: P0A759 Feb 2006
Person Uncurated MultiFun 1.7.12 (metabolism; central intermediary metabolism; amino sugar conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002304 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10633 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786893 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A759 Published Annotation - Swiss-Prot Accession Number: P0A759 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A759 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945290 Published Annotation - Entrez Gene Database ID: 945290
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Central intermediary metabolism: Amino sugars Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0046349 - amino sugar biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73772.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006044 N-acetylglucosamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004342 glucosamine-6-phosphate deaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000265 nagB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001357 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001136 nagB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000861 nagB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000733 nagB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000602 nagB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003535 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004462 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001266 nagB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002995 nagB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001488 nagB_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002020 nagB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007912 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020501 nagB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001210 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001711 nagB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299676 nagB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001278 nagB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002406 nagB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000273 nagB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009565 nagB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000697 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005846 nagB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000598 nagB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003688 nagB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008914 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009517 nagB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009932 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076836 nagB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000729 nagB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000836 nagB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010558 nagB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006946 nagB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000591 nagB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005150 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005965 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010941 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008521 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005786 nagB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005609 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010491 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009340 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010219 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006555 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010538 nagB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006832 nagB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024660 nagB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009203 nagB_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005403 nagB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000957 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000659 nagB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000684 nagB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000958 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000920 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000797 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000753 nagB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174844 nagB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000755 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000697 nagB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130609 nagB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005352 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000674 nagB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000746 nagB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001960 nagB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000701 nagB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003612 nagB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005671 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000443 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002876 nagB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000483 nagB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003729 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001197 nagB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003077 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008850 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002870 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291237 nagB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004286 nagB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061578 nagB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000734 nagB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000339 nagB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002184 nagB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005900 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139740 nagB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004909 nagB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002373 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000842 nagB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005064 nagB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002177 nagB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002112 nagB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008707 nagB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005168 nagB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004525 nagB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007949 nagB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005105 nagB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004311 nagB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005113 nagB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008965 nagB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002070 nagB CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002057 nagB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002872 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005403 nagB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008961 nagB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004929 nagB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006012 nagB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106701 nagB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083905 nagB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000797 nagB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092596 nagB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008790 nagB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006536 nagB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007130 nagB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004629 nagB CDS
Person Approved Go view Shigella boydii 227 ADV-0000583 nagB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005970 nagB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007285 nagB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000685 nagB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071621 nagB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086960 nagB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000688 nagB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000680 nagB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003918 VCA1025 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002387 nagB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002958 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008643 glmD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003151 nagB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001215 nagB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002217 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236772 nagB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004443 nagB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002970 nagB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006528 nagB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000845 nagB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124079 nagB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004513 nagB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005318 nagB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007006 nagB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004694 nagB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030870 nagB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008541 nagB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001350 nagB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003151 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005348 nagB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006907 nagB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001179 nagB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001387 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003567 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010088 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001783 nagB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20219mutantTn5 InsertionRequest the StrainABE-0002304nagBnagB::Tn5KAN-2 at position 212 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 697811 to 708611
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002292asnBCDScomplement697513699177Downstream
ABE-0285388repeat_regionforward699425699522Downstream
ABE-0002296umpHCDScomplement699574700326Downstream
ABE-0002299nagCCDScomplement700374701594Downstream
ABE-0002301nagACDScomplement701603702751Downstream
ABE-0002304nagBCDScomplement702811703611Matches
ABE-0002312nagECDSforward703944705890Upstream
ABE-0285389repeat_regionforward705897705932Upstream
ABE-0002317glnSCDSforward706093707757Upstream
ABE-0285390repeat_regionforward707770707934Upstream
ABE-0285835chiZncRNAforward708236708333Upstream
ABE-0002323chiPCDSforward708334709740Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.