Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002312 (nagE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002312 showshow history
Names
nagE ptsN JW0665 ECK0667 pstN b0679
Product
PTS system glucosamine-specific IIABC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 703944 705890 1947 649
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001127 (IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1) Apr 2008
Automated Process Approved IPR011535 (IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component) Apr 2008
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Apr 2008
Automated Process Approved IPR001996 (IPR001996 Phosphotransferase system, IIB component, type 1) Apr 2008
Automated Process Approved IPR011055 (IPR011055 Duplicated hybrid motif) Apr 2008
Automated Process Approved IPR004719 (IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component) Apr 2008
Automated Process Approved IPR010974 (IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component) Apr 2008
Automated Process Approved IPR013013 (IPR013013 Phosphotransferase system, EIIC component, type 1) Apr 2008
Automated Process Approved IPR018113 (IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site) Jul 2018
Automated Process Approved IPR036878 (IPR036878 Glucose permease domain IIB) Jul 2018
Automated Process Approved PF00367 (PF00367 phosphotransferase system, EIIB) Jul 2018
Automated Process Approved PF02378 (PF02378 Phosphotransferase system, EIIC) Jul 2018
Automated Process Approved PF00358 (PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010974
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015572 N-acetylglucosamine transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010974
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018113, IPR003352, IPR010974, IPR001996, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nagE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym pstN Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym ptsN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0667 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0665 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0679 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product PTS system glucosamine-specific IIABC component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name PTS family enzyme IIC (N-terminal); enzyme IIB (center); enzyme IIC (C-terminal), N-acetylglucosamine-specific Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name PTS system, N-acetylglucosamine-specific enzyme IIABC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR018113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013013 Phosphotransferase system, EIIC component, type 1 Protein Sequence Similarity - InterPro Domain: IPR013013
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 Protein Sequence Similarity - InterPro Domain: IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Protein Sequence Similarity - PFAM Model Name: PF00358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011535 (DEPRECATED) Phosphotransferase system, glucose-like IIB component Protein Sequence Similarity - InterPro Domain: IPR011535
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011055 Duplicated hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011055
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component Protein Sequence Similarity - InterPro Domain: IPR010974
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001996 Phosphotransferase system, IIB component, type 1 Protein Sequence Similarity - InterPro Domain: IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Protein Sequence Similarity - InterPro Domain: IPR004719
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02378 Phosphotransferase system, EIIC Protein Sequence Similarity - PFAM Model Name: PF02378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00367 phosphotransferase system, EIIB Protein Sequence Similarity - PFAM Model Name: PF00367
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036878 Glucose permease domain IIB Protein Sequence Similarity - InterPro Domain: IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P09323 Feb 2006
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P09323 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.142 (transport; substrate; N-acetylglucosamine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.1 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Glucose-Glucoside (Glc) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.12 (metabolism; central intermediary metabolism; amino sugar conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786894 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002312 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P09323 Published Annotation - Swiss-Prot Accession Number: P09323 Jan 2005
Automated Process Approved db xref EcoGene:EG10635 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945292 Published Annotation - Entrez Gene Database ID: 945292
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09323 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system, N-acetylglucosamine-specific enzyme IIABC; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009310 - amine catabolic process; GO_process: GO:0046349 - amino sugar biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73773.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010974
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0015572 N-acetylglucosamine transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010974
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018113, IPR003352, IPR010974, IPR001996, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001356 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001053 nagE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000693 nagE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000293 nagE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000236 nagE CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002994 nagE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001489 ptsG_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002021 ptsG_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007911 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020503 nagE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001211 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001712 nagE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299679 nagE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001279 nagE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002405 ptsG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000271 nagE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000698 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005844 nagE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000599 nagE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003686 nagE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008913 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009515 nagE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009930 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076838 nagE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000838 nagE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010560 nagE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006944 nagE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000592 nagE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005151 nagE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005967 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010943 nagE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008523 nagE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005788 nagE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005611 nagE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010489 nagE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009342 nagE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010221 nagE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006557 nagE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024661 nagE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009201 nagE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005404 nagE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000958 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000660 nagE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000685 nagE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000957 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000921 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000796 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000755 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174845 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000757 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000699 nagE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130610 nagE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005354 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000676 nagE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000747 nagE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000702 nagE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005672 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061579 nagE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003014 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001553 nagE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005901 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139744 nagE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004910 nagE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002372 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000843 nagE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005065 nagE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002181 nagE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002115 nagE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008706 nagE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005169 nagE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004526 nagE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007950 nagE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005106 nagE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004312 nagE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005114 nagE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008964 nagE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002069 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002056 nagE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002870 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005404 nagE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008960 nagE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004930 nagE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006013 nagE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106704 nagE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083904 nagE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000799 nagE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092611 nagE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008789 nagE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006535 nagE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007131 nagE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004628 nagE CDS
Person Approved Go view Shigella boydii 227 ADV-0000584 nagE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005968 nagE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007286 nagE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000686 nagE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071620 nagE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086959 nagE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000687 nagE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000681 nagE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001063 VC0995 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002390 nagE CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008636 nagE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003152 nagE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001216 nagE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002216 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236761 nagE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004444 nagE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002969 nagE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006527 nagE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000844 nagE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124082 nagE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004512 nagE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005319 nagE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003148 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007007 nagE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004695 nagE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030871 nagE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008540 nagE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001351 nagE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003150 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005347 nagE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006906 nagE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001180 nagE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001388 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003566 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 698944 to 710890
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002292asnBCDScomplement697513699177Upstream
ABE-0285388repeat_regionforward699425699522Upstream
ABE-0002296umpHCDScomplement699574700326Upstream
ABE-0002299nagCCDScomplement700374701594Upstream
ABE-0002301nagACDScomplement701603702751Upstream
ABE-0002304nagBCDScomplement702811703611Upstream
ABE-0002312nagECDSforward703944705890Matches
ABE-0285389repeat_regionforward705897705932Downstream
ABE-0002317glnSCDSforward706093707757Downstream
ABE-0285390repeat_regionforward707770707934Downstream
ABE-0285835chiZncRNAforward708236708333Downstream
ABE-0002323chiPCDSforward708334709740Downstream
ABE-0002325chiQCDSforward709790710116Downstream
ABE-0002327furCDScomplement710200710646Downstream
ABE-0285204uofCDScomplement710639710725Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.