Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002317 (glnS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002317 showshow history
Names
glnS JW0666 ECK0668 b0680
Product
glutamyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 706093 707757 1665 555
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000266
EnteroFam0002317: Trusted threshold=1648.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004514 (IPR004514 Glutamine-tRNA synthetase) Apr 2008
Automated Process Approved IPR000924 (IPR000924 Glutamyl/glutaminyl-tRNA synthetase) Apr 2008
Automated Process Approved IPR011035 (IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR020058 (IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain) Jul 2018
Automated Process Approved IPR020059 (IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain) Jul 2018
Automated Process Approved PF00749 (PF00749 tRNA synthetases class I (E and Q), catalytic domain) Jul 2018
Automated Process Approved PF03950 (PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0006425 glutaminyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004514
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011035
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006424 glutamyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004514
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020059, IPR004514
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004819 glutamine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004514
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004514
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004818 glutamate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glnS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0668 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0666 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0680 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glutamine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002317: Trusted threshold=1648.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000266
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011035
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00749 tRNA synthetases class I (E and Q), catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00749
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Protein Sequence Similarity - PFAM Model Name: PF03950
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR020058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain Protein Sequence Similarity - InterPro Domain: IPR020059
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004514 Glutamine-tRNA synthetase Protein Sequence Similarity - InterPro Domain: IPR004514
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000924 Glutamyl/glutaminyl-tRNA synthetase Protein Sequence Similarity - InterPro Domain: IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.18 Published Annotation - Swiss-Prot Accession Number: P00962 Feb 2006
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002317 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10390 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00962 Published Annotation - Swiss-Prot Accession Number: P00962 Jan 2005
Automated Process Approved db xref GI:1786895 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945310 Published Annotation - Entrez Gene Database ID: 945310
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00962 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutamine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73774.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006425 glutaminyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004514
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011035
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006424 glutamyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004514
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004819 glutamine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004514
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020059, IPR004514
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004818 glutamate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004514
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000266 glnS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001355 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000455 glnS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000367 glnS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000292 glnS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000243 glnS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003537 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004460 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129685 glnS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105101 glnS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104527 glnS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001268 glnS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002993 glnS CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001490 glnS CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002022 glnS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007910 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016984 glnS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001212 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001713 glnS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299687 glnS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001280 glnS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002404 glnS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000269 glnS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000707 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005842 glnS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000608 glnS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003675 glnS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008912 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009928 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076849 glnS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000733 glnS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000839 glnS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010562 glnS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006942 glnS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000602 glnS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005153 glnS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005969 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008525 glnS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005790 glnS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010732 glnS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005613 glnS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010487 glnS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009344 glnS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006559 glnS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006837 glnS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024662 glnS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009191 glnS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005406 glnS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000969 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000661 glnS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000686 glnS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000956 glnS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000922 glnS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000795 glnS CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000766 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174857 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000758 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000701 glnS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130611 glnS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005356 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000686 glnS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000748 glnS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001962 glnS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000703 glnS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003614 glnS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005673 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000446 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002879 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000485 glnS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003727 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001199 glnS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003075 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008852 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002872 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291239 glnS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004288 glnS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061580 glnS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000754 glnS CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001554 glnS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005902 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139748 glnS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003804 glnS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004911 glnS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002371 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000844 glnS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005066 glnS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002188 glnS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002122 glnS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008705 glnS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005170 glnS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004527 glnS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007951 glnS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005107 glnS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004313 glnS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005115 glnS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008963 glnS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002068 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002055 glnS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002869 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005405 glnS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008959 glnS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004931 glnS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006014 glnS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106709 glnS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083903 glnS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000800 glnS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092614 glnS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008788 glnS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006534 glnS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007132 glnS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004627 glnS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265352 glnS CDS
Person Approved Go view Shigella boydii 227 ADV-0000585 glnS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005967 glnS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007287 glnS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000687 glnS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071618 glnS CDS
Person Approved Go view Shigella flexneri 301 ABT-0086958 glnS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000686 glnS CDS
Person Approved Go view Shigella sonnei 046 ADD-0000682 glnS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001065 VC0997 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000455 glnS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002393 glnS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002955 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008632 glnS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003153 glnS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003816 glnS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002215 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236759 glnS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004431 glnS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002967 glnS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006525 glnS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000842 glnS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124100 glnS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004510 glnS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005322 glnS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000549 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007009 glnS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004697 glnS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030874 glnS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008538 glnS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001353 glnS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003149 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005345 glnS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006905 glnS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001181 glnS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001389 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003564 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010106 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001785 glnS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 701093 to 712757
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002299nagCCDScomplement700374701594Upstream
ABE-0002301nagACDScomplement701603702751Upstream
ABE-0002304nagBCDScomplement702811703611Upstream
ABE-0002312nagECDSforward703944705890Upstream
ABE-0285389repeat_regionforward705897705932Upstream
ABE-0002317glnSCDSforward706093707757Matches
ABE-0285390repeat_regionforward707770707934Downstream
ABE-0285835chiZncRNAforward708236708333Downstream
ABE-0002323chiPCDSforward708334709740Downstream
ABE-0002325chiQCDSforward709790710116Downstream
ABE-0002327furCDScomplement710200710646Downstream
ABE-0285204uofCDScomplement710639710725Downstream
ABE-0285391repeat_regionforward710908710940Downstream
ABE-0002332fldACDScomplement710935711465Downstream
ABE-0002335ybfECDScomplement711605711898Downstream
ABE-0002337ybfFCDScomplement712038712802Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.