Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002332 (fldA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002332 showshow history
Names
fldA JW0671 ECK0672 b0684
Product
flavodoxin 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 710935 711465 531 177
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000268
EnteroFam0002332: Trusted threshold=512.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008254 (IPR008254 Flavodoxin/nitric oxide synthase) Apr 2008
Automated Process Approved IPR010086 (IPR010086 Flavodoxin, long chain) Apr 2008
Automated Process Approved IPR014357 (IPR014357 (DEPRECATED) Flavodoxin) Apr 2008
Automated Process Approved IPR001226 (IPR001226 Flavodoxin, conserved site) Apr 2008
Automated Process Approved IPR029039 (IPR029039 Flavoprotein-like superfamily) Jul 2018
Automated Process Approved PF00258 (PF00258 Flavodoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		May 2006
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fldA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0671 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0672 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0684 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product flavodoxin 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002332: Trusted threshold=512.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000268
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008254 Flavodoxin/nitric oxide synthase Protein Sequence Similarity - InterPro Domain: IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00258 Flavodoxin Protein Sequence Similarity - PFAM Model Name: PF00258
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014357 (DEPRECATED) Flavodoxin Protein Sequence Similarity - InterPro Domain: IPR014357
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029039 Flavoprotein-like superfamily Protein Sequence Similarity - InterPro Domain: IPR029039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010086 Flavodoxin, long chain Protein Sequence Similarity - InterPro Domain: IPR010086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001226 Flavodoxin, conserved site Protein Sequence Similarity - InterPro Domain: IPR001226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945293 Published Annotation - Entrez Gene Database ID: 945293
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P61949 Published Annotation - Swiss-Prot Accession Number: P61949 Jan 2006
Automated Process Approved db xref GI:1786900 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P61949 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10318 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002332 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of aidB ASAP:13701:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of ubiX ASAP:7628:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of ispG ASAP:8281:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved protein id AAC73778.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		May 2006
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008254
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000268 fldA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001353 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001426 fldA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001340 fldA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000536 fldA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001271 fldA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003539 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004458 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129569 fldA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105003 fldA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104409 fldA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001272 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002989 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001498 fldA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002030 fldA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007908 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016981 fldA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001214 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001717 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299698 fldA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001284 fldA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002400 fldA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000265 fldA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000712 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005838 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000612 fldA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003670 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008906 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009923 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076855 fldA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000607 fldA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005159 fldA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005977 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010952 fldA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008531 fldA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005796 fldA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005619 fldA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009350 fldA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009061 fldA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006565 fldA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024667 fldA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005411 fldA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000665 fldA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000690 fldA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000763 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000705 fldA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130616 fldA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005364 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000691 fldA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000753 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001967 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000709 fldA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003618 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005675 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000449 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002882 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000487 fldA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003724 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001202 fldA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003072 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008855 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002875 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291243 fldA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004291 fldA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061582 fldA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000751 fldA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000341 fldA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005904 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139773 fldA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004919 fldA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002364 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000852 fldA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005075 fldA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002216 fldA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002150 fldA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008631 fldA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005179 fldA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004536 fldA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005115 fldA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004322 fldA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005123 fldA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008954 fldA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002060 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002047 fldA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002858 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005414 fldA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008951 fldA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004940 fldA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006022 fldA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106727 fldA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083895 fldA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000811 fldA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092640 fldA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008778 fldA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006525 fldA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007141 fldA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004621 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265913 CDS
Person Approved Go view Shigella boydii 227 ADV-0000589 fldA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005963 fldA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000700 fldA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071612 fldA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086954 fldA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000682 fldA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000686 fldA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003551 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002175 VC2099 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000603 fldA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002401 fldA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002950 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008616 fldA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003158 fldA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003821 fldA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002211 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236753 fldA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004426 fldA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002960 fldA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006520 fldA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000839 fldA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124109 fldA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004505 fldA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005327 fldA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000556 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004702 fldA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030878 fldA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008533 fldA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001360 fldA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003142 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005340 fldA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006899 fldA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001185 fldA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001395 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003558 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010127 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001789 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 705935 to 716465
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002317glnSCDSforward706093707757Downstream
ABE-0285390repeat_regionforward707770707934Downstream
ABE-0285835chiZncRNAforward708236708333Downstream
ABE-0002323chiPCDSforward708334709740Downstream
ABE-0002325chiQCDSforward709790710116Downstream
ABE-0002327furCDScomplement710200710646Downstream
ABE-0285204uofCDScomplement710639710725Downstream
ABE-0285391repeat_regionforward710908710940Overlaps Downstream
ABE-0002332fldACDScomplement710935711465Matches
ABE-0002335ybfECDScomplement711605711898Upstream
ABE-0002337ybfFCDScomplement712038712802Upstream
ABE-0002343seqACDSforward712987713532Upstream
ABE-0002345pgmCDSforward713558715198Upstream
ABE-0285392repeat_regionforward715264715361Upstream
ABE-0002350ybfPCDSforward715412715906Upstream
ABE-0002352ybfG_2CDSpcomplement715947716357Upstream
ABE-0285121ybfGpseudogenecomplement715947716597Upstream
ABE-0002355ybfG_1CDSpcomplement716388716597Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.