Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002345 (pgm) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002345 showshow history
Names
pgm pgmA JW0675 ECK0676 blu b0688
Product
phosphoglucomutase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 713558 715198 1641 547
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000272
EnteroFam0002345: Trusted threshold=1578.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005852 (IPR005852 Phosphoglucomutase, alpha-D-glucose specific) Apr 2008
Automated Process Approved IPR005841 (IPR005841 Alpha-D-phosphohexomutase superfamily) Apr 2008
Automated Process Approved IPR005844 (IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I) Apr 2008
Automated Process Approved IPR005845 (IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II) Apr 2008
Automated Process Approved IPR005846 (IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III) Apr 2008
Automated Process Approved IPR005843 (IPR005843 Alpha-D-phosphohexomutase, C-terminal) Apr 2008
Automated Process Approved IPR036900 (IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR016055 (IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III) Jul 2018
Automated Process Approved PF02878 (PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I) Jul 2018
Automated Process Approved PF00408 (PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain) Jul 2018
Automated Process Approved PF02880 (PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III) Jul 2018
Automated Process Approved PF02879 (PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005852
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0071704 organic substance metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005843, IPR036900
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016868 intramolecular transferase activity, phosphotransferases GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004614 phosphoglucomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005852
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pgm Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym blu Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0675 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0676 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pgmA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0688 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoglucomutase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002345: Trusted threshold=1578.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000272
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Protein Sequence Similarity - InterPro Domain: IPR005845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Protein Sequence Similarity - InterPro Domain: IPR005844
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005852 Phosphoglucomutase, alpha-D-glucose specific Protein Sequence Similarity - InterPro Domain: IPR005852
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Protein Sequence Similarity - InterPro Domain: IPR016055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005841 Alpha-D-phosphohexomutase superfamily Protein Sequence Similarity - InterPro Domain: IPR005841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Protein Sequence Similarity - InterPro Domain: IPR005846
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Protein Sequence Similarity - PFAM Model Name: PF02878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036900
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005843 Alpha-D-phosphohexomutase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00408
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Protein Sequence Similarity - PFAM Model Name: PF02880
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Protein Sequence Similarity - PFAM Model Name: PF02879
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 5.4.2.- Published Annotation - Database Name: EC2GO: GO:0016868
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 5.4.2.2 Published Annotation - Swiss-Prot Accession Number: P36938 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.9 (metabolism; central intermediary metabolism; glucose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002345 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P36938 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P36938 Published Annotation - Swiss-Prot Accession Number: P36938 Jan 2005
Automated Process Approved db xref EcoGene:EG12144 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945271 Published Annotation - Entrez Gene Database ID: 945271
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786904 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0006006 - glucose metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73782.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0071704 organic substance metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005843, IPR036900
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006006 glucose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005852
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004614 phosphoglucomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005852
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016868 intramolecular transferase activity, phosphotransferases GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000272 pgm CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001952 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000891 pgm CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000556 pgm CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000485 pgm CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000283 pgm CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003544 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004452 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001276 pgm CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002985 pgm CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001502 pgm CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002034 pgm CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0007903 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016975 pgm CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001219 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001721 pgm CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299708 pgm CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001288 pgm CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002396 pgm CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000261 pgm CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008564 pgm CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000716 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005834 pgm CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000616 pgm CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003666 pgm CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008902 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008771 pgm CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007477 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076859 pgm CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000741 pgm CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000848 pgm CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009304 pgm CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009374 pgm CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000611 pgm CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005163 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002711 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010956 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008535 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005800 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008720 pgm CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005623 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009065 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006569 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010504 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010271 pgm CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007161 pgm CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024671 pgm CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009332 pgm CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005415 pgm CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000979 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000669 pgm CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000694 pgm CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000947 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000931 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000786 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000774 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174866 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000767 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000709 pgm CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130620 pgm CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005368 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000695 pgm CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000758 pgm CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001972 pgm CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000713 pgm CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003622 pgm CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0005681 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000453 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002886 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000491 pgm CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003720 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001206 pgm CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003068 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008859 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002879 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291247 pgm CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004295 pgm CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061588 pgm CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002658 CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0001622 pgm CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0005910 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139961 pgm CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003085 pgm CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004923 pgm CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002358 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000856 pgm CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005080 pgm CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002225 pgm CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002159 pgm CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008636 pgm CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005184 pgm CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004541 pgm CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007149 pgm CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005119 pgm CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004326 pgm CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005128 pgm CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008949 pgm CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002056 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002043 pgm CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002853 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005419 pgm CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008005 pgm CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004945 pgm CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008031 pgm CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106735 pgm CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083891 pgm CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000816 pgm CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092652 pgm CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008773 pgm CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006520 pgm CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007146 pgm CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004616 pgm CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265919 pgm CDS
Person Approved Go view Shigella boydii 227 ADV-0000593 pgm CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0005959 pgm CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006675 pgm CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000704 pgm CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071608 pgm CDS
Person Approved Go view Shigella flexneri 301 ABT-0086950 pgm CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000678 pgm CDS
Person Approved Go view Shigella sonnei 046 ADD-0000690 pgm CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002171 VC2095 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000602 pgm CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002447 pgm CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002945 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008599 pgm CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003163 pgm CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002134 pgm CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002206 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240319 pgm CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007696 pgm CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002904 pgm CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006467 pgm CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000796 pgm CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124278 pgm CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004454 pgm CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005378 pgm CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002272 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004755 pgm CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030928 pgm CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007258 pgm CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001419 pgm CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001896 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005291 pgm CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005055 pgm CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003019 pgm CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003629 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001351 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010137 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001794 pgm CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 708558 to 720198
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002323chiPCDSforward708334709740Upstream
ABE-0002325chiQCDSforward709790710116Upstream
ABE-0002327furCDScomplement710200710646Upstream
ABE-0285204uofCDScomplement710639710725Upstream
ABE-0285391repeat_regionforward710908710940Upstream
ABE-0002332fldACDScomplement710935711465Upstream
ABE-0002335ybfECDScomplement711605711898Upstream
ABE-0002337ybfFCDScomplement712038712802Upstream
ABE-0002343seqACDSforward712987713532Upstream
ABE-0002345pgmCDSforward713558715198Matches
ABE-0285392repeat_regionforward715264715361Downstream
ABE-0002350ybfPCDSforward715412715906Downstream
ABE-0002352ybfG_2CDSpcomplement715947716357Downstream
ABE-0285121ybfGpseudogenecomplement715947716597Downstream
ABE-0002355ybfG_1CDSpcomplement716388716597Downstream
ABE-0285170ybfIpseudogenecomplement716721716864Downstream
ABE-0002360potECDScomplement716946718265Downstream
ABE-0002362speFCDScomplement718262720460Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.