Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002360 (potE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002360 showshow history
Names
potE JW0679 ECK0680 b0692
Product
putrescine:proton symporter/putrescine:ornithine antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 716946 718265 1320 440
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004754 (IPR004754 Amino acid antiporter) Apr 2008
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Apr 2008
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Apr 2008
Automated Process Approved IPR027566 (IPR027566 Putrescine transporter PotE) Jul 2018
Automated Process Approved PF13520 (PF13520 Amino acid permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0015822 ornithine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027566
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0015847 putrescine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027566
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0015496 putrescine:ornithine antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name potE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW0679 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0680 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0692 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putrescine:proton symporter/putrescine:ornithine antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name putrescine transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putrescine:ornithine antiporter (APC family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF13520 Amino acid permease Protein Sequence Similarity - PFAM Model Name: PF13520
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027566 Putrescine transporter PotE Protein Sequence Similarity - InterPro Domain: IPR027566
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004754 Amino acid antiporter Protein Sequence Similarity - InterPro Domain: IPR004754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.4 (metabolism; carbon utilization; amines) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.14 (metabolism; central intermediary metabolism; polyamine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.164 (transport; substrate; putrescine/ornithine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.3 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Amino Acid-Polyamine-Choline (APC) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.1 (cell processes; adaptation to stress; osmotic pressure) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002360 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10753 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786908 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAF1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAF1 Published Annotation - Swiss-Prot Accession Number: P0AAF1 Jan 2006
Automated Process Approved db xref GeneID:945422 Published Annotation - Entrez Gene Database ID: 945422
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function transport; Transport of small molecules: Amino acids, amines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putrescine transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015496 - putrescine:ornithine antiporter activity; GO_process: GO:0009310 - amine catabolic process; GO_process: GO:0006596 - polyamine biosynthetic process; GO_process: GO:0006970 - response to osmotic stress Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73786.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0015822 ornithine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027566
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006970 response to osmotic stress Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009310 amine catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015847 putrescine transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR027566
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005279 (DEPRECATED) amino acid-polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004754
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0015496 putrescine:ornithine antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006656 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002784 potE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002798 potE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003538 adiC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002656 potE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003822 potE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002984 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001503 potE_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001722 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000260 potE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008561 potE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000717 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005831 potE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000617 potE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003665 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008897 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008770 potE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007476 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076860 potE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000742 potE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000849 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009303 potE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009375 potE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000612 potE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005164 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002712 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010957 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008536 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005801 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008721 potE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005624 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009591 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009356 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009066 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006570 potE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010505 potE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010270 potE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007162 potE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024672 potE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009331 potE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000980 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000673 potE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000698 potE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000932 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000782 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000775 potE CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174867 potE pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000768 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000713 potE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130621 potE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005369 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000696 potE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001126 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004925 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002356 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000858 potE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005082 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002232 potE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002166 potE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008638 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005186 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004543 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007151 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005121 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004328 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005130 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008947 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002054 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002041 potE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002851 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005421 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008003 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004947 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008033 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106739 potE CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083889 potE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000818 potE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092655 potE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008771 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006518 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007148 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000506 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263864 potE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071607 potE CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0255934 potE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000677 potE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000691 potE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003955 VCA1062 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001015 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002153 potE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001611 potE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001872 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010145 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001796 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 711946 to 723265
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002337ybfFCDScomplement712038712802Downstream
ABE-0002343seqACDSforward712987713532Downstream
ABE-0002345pgmCDSforward713558715198Downstream
ABE-0285392repeat_regionforward715264715361Downstream
ABE-0002350ybfPCDSforward715412715906Downstream
ABE-0002352ybfG_2CDSpcomplement715947716357Downstream
ABE-0285121ybfGpseudogenecomplement715947716597Downstream
ABE-0002355ybfG_1CDSpcomplement716388716597Downstream
ABE-0285170ybfIpseudogenecomplement716721716864Downstream
ABE-0002360potECDScomplement716946718265Matches
ABE-0002362speFCDScomplement718262720460Overlaps Upstream
ABE-0285828speFLCDScomplement720718720822Upstream
ABE-0002366kdpECDScomplement721056721733Upstream
ABE-0002368kdpDCDScomplement721730724414Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.