Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002374 (kdpC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002374 showshow history
Names
kdpC JW0684 ECK0684 kac b0696
Product
potassium translocating ATPase subunit C
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 724407 724979 573 191
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000275
EnteroFam0002374: Trusted threshold=501.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003820 (IPR003820 Potassium-transporting ATPase C chain) Apr 2008
Automated Process Approved PF02669 (PF02669 K+-transporting ATPase, c chain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2Go
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane Experimental - PubMed ID: 9858692
Reference: Escherichia coli K-12 		Jun 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0016021 integral component of membrane Experimental - PubMed ID: 9858692
Reference: Escherichia coli 		Jun 2006
Automated Process Approved GO molecular function GO:0008556 P-type potassium transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:spkw2go
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Person Approved GO molecular function GO:0008556 P-type potassium transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:spkw2go
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Person Approved GO molecular function GO:0015662 P-type ion transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name kdpC Published Annotation - PubMed ID: 356049
Reference: Escherichia coli K-12 		Sep 2007
Person Approved synonym kac Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0684 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0684 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0696 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product potassium translocating ATPase subunit C Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name P-type ATPase, high-affinity potassium transport system, C chain Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name high-affinity potassium transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002374: Trusted threshold=501.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000275
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003820 Potassium-transporting ATPase C chain Protein Sequence Similarity - InterPro Domain: IPR003820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02669 K+-transporting ATPase, c chain Protein Sequence Similarity - PFAM Model Name: PF02669
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 7.2.2.6 Published Annotation - EcoCyc Accession Number: EG10515
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.3 (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The P-type ATPase (P-ATPase) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.96 (transport; substrate; K+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10515 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002374 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P03961 Published Annotation - Swiss-Prot Accession Number: P03961 Jan 2005
Automated Process Approved db xref GI:1786913 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P03961 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947508 Published Annotation - Entrez Gene Database ID: 947508
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note high-affinity potassium transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73790.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2Go
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005886 plasma membrane Experimental - PubMed ID: 9858692
Reference: Escherichia coli K-12 		Jun 2006
Person Approved GO cellular component GO:0016021 integral component of membrane Experimental - PubMed ID: 9858692
Reference: Escherichia coli 		Jun 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0015662 P-type ion transporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008556 P-type potassium transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003820
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:spkw2go
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Person Approved GO molecular function GO:0008556 P-type potassium transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: GO:spkw2go
Reference: Escherichia coli K-12 MG1655 		Jun 2006
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000275 kdpC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002253 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001667 kdpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001594 kdpC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001799 kdpC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001676 kdpC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001279 kdpC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002977 kdpC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001507 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007897 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016970 kdpC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001223 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001727 kdpC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306784 kdpC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003800 kdpC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003472 kdpC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000255 kdpC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008556 kdpC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000722 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005825 kdpC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000621 kdpC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003658 kdpC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008893 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008764 kdpC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007471 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076865 kdpC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000747 kdpC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000853 kdpC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009298 kdpC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009381 kdpC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000616 kdpC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005169 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002716 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010962 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008541 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005806 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008726 kdpC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005629 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009596 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009362 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009071 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006575 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010510 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010265 kdpC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007167 kdpC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024678 kdpC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009325 kdpC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005423 kdpC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000984 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000677 kdpC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000702 kdpC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0000982 kdpC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000938 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000777 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000780 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174871 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000773 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000717 kdpC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130625 kdpC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005373 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000702 kdpC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000763 kdpC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000717 kdpC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003625 kdpC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005687 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002943 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000445 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003073 kdpC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000911 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003896 kdpC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000258 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011511 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288375 kdpC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006824 kdpC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061592 kdpC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000759 kdpC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001558 kdpC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005915 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139982 kdpC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002288 kdpC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004930 kdpC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002352 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000862 kdpC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005086 kdpC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002251 kdpC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002185 kdpC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008643 kdpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005191 kdpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004548 kdpC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007156 kdpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005126 kdpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004333 kdpC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005135 kdpC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008942 kdpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002050 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002037 kdpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002845 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005426 kdpC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007998 kdpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004952 kdpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008038 kdpC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106753 kdpC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083885 kdpC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000824 kdpC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092666 kdpC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008766 kdpC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006513 kdpC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007153 kdpC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004611 kdpC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006683 kdpC CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000707 kdpC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071603 kdpC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000672 kdpC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000695 kdpC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002459 kdpC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003501 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008573 kdpC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003685 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002138 kdpC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002201 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240332 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007702 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002911 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006461 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000790 kdpC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124299 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004449 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005384 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002276 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006217 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004761 kdpC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030933 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007264 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001426 kdpC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001888 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005285 kdpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005060 kdpC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003014 kdpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003622 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001357 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010180 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001801 kdpC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 719407 to 729979
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002362speFCDScomplement718262720460Downstream
ABE-0285828speFLCDScomplement720718720822Downstream
ABE-0002366kdpECDScomplement721056721733Downstream
ABE-0002368kdpDCDScomplement721730724414Overlaps Downstream
ABE-0002374kdpCCDScomplement724407724979Matches
ABE-0002376kdpBCDScomplement724988727036Upstream
ABE-0002381kdpACDScomplement727059728732Upstream
ABE-0285034kdpFCDScomplement728732728821Upstream
ABE-0002386ybfACDSforward729134729340Upstream
ABE-0002392rhsCCDSforward729583733776Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.