Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002420 (dtpD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002420 showshow history
Names
dtpD JW0699 ECK0698 ybgH b0709
Product
dipeptide:proton symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 741075 742556 1482 494
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000109 (IPR000109 Proton-dependent oligopeptide transporter family) Apr 2008
Automated Process Approved IPR005279 (IPR005279 Dipeptide/tripeptide permease) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF00854 (PF00854 POT family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:1904680 peptide transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dtpD Published Annotation - PubMed ID: 19782088
Reference: Escherichia coli 		Oct 2010
Person Approved synonym JW0699 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0698 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybgH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0709 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product dipeptide:proton symporter Experimental - PubMed ID: 25066136
Reference: Escherichia coli BL21 		Feb 2021
Person Uncurated alternate product name dipeptide and tripeptide permease D Experimental - PubMed ID: 19782088
Reference: Escherichia coli 		Feb 2021
Protein Family
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00854 POT family Protein Sequence Similarity - PFAM Model Name: PF00854
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005279 Dipeptide/tripeptide permease Protein Sequence Similarity - InterPro Domain: IPR005279
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000109 Proton-dependent oligopeptide transporter family Protein Sequence Similarity - InterPro Domain: IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.148 (transport; substrate; oligopeptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.17 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Proton-dependent Oligopeptide Transporter (POT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002420 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13304 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75742 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947368 Published Annotation - Entrez Gene Database ID: 947368
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P75742 Published Annotation - Swiss-Prot Accession Number: P75742 Jan 2005
Automated Process Approved db xref GI:1786927 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73803.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:1904680 peptide transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006657 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002947 dtpD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003243 dtpD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003565 dtpD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000058 dtpD CDS
Ortholog
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002043 dtpD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000245 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008544 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000729 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005807 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000626 ybgH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003651 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008876 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008749 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007460 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076872 dtpD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000968 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000863 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009393 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000623 ybgH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005181 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002725 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010971 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008551 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005817 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008736 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005639 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009606 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009371 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009081 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006585 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009534 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009078 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007176 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024695 ybgH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009318 dtpD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005437 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000991 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000689 ybgH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000716 ybgH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001027 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000958 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000897 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000786 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174878 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000785 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000723 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130636 ybgH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005383 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000709 ybgH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004106 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000722 ybgH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004935 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002341 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000868 ybgH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005092 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002273 ybgH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002206 ybgH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008649 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005197 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004554 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007161 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005132 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004339 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005140 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008937 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002044 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002031 ybgH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002838 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005431 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007992 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004957 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008044 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106765 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083880 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000831 ybgH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092688 ybgH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008760 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006508 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007158 CDS
Person Approved Go view Shigella boydii 227 ADV-0000612 ybgH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006023 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006696 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071591 ybgH CDS
Person Approved Go view Shigella flexneri 301 ABT-0086937 ybgH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000660 ybgH CDS
Person Approved Go view Shigella sonnei 046 ADD-0000710 ybgH CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010194 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001807 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 736075 to 747556
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002404ybfCCDSforward735650736219Downstream
ABE-0285035ybfQpseudogeneforward736445736681Downstream
ABE-0002407ybfLpseudogeneforward736825737961Downstream
ABE-0002411ybfDCDSforward738092738853Downstream
ABE-0002414ybgACDSforward739001739510Downstream
ABE-0002417phrCDSforward739507740925Downstream
ABE-0285393repeat_regionforward740954741059Downstream
ABE-0002420dtpDCDScomplement741075742556Matches
ABE-0002424ybgICDSforward742827743570Upstream
ABE-0002426pxpBCDSforward743593744249Upstream
ABE-0002428pxpCCDSforward744243745175Upstream
ABE-0002431pxpACDSforward745165745899Upstream
ABE-0002433neiCDSforward745935746726Upstream
ABE-0002435abrBCDScomplement746723747769Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.