Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002451 (gltA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002451 showshow history
Names
gltA JW0710 gluT ECK0709 icdB glut b0720
Product
citrate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 753185 754468 1284 428
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010953 (IPR010953 Citrate synthase, type I) Apr 2008
Automated Process Approved IPR002020 (IPR002020 Citrate synthase) Apr 2008
Automated Process Approved IPR036969 (IPR036969 Citrate synthase superfamily) Jul 2018
Automated Process Approved PF00285 (PF00285 Citrate synthase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004108 citrate (Si)-synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010953
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002020
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gltA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym glut Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym icdB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0710 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym gluT Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK0709 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0720 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product citrate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name citrate synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR002020 Citrate synthase Protein Sequence Similarity - InterPro Domain: IPR002020
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010953 Citrate synthase, type I Protein Sequence Similarity - InterPro Domain: IPR010953
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00285 Citrate synthase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00285
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036969 Citrate synthase superfamily Protein Sequence Similarity - InterPro Domain: IPR036969
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.3.3.- Published Annotation - Database Name: EC2GO: GO:0046912
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.3.3.1 Published Annotation - Swiss-Prot Accession Number: P0ABH7 Feb 2006
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10402 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABH7 Published Annotation - Swiss-Prot Accession Number: P0ABH7 Jan 2006
Automated Process Approved db xref GeneID:945323 Published Annotation - Entrez Gene Database ID: 945323
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0002451 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABH7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786939 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: TCA cycle Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006099 - tricarboxylic acid cycle; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73814.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004108 citrate (Si)-synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010953
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002020
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000781 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000852 gltA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000789 gltA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001352 gltA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000177 gltA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003553 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004442 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003053 gltA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002966 gltA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001522 gltA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002053 gltA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007886 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016958 gltA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001234 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001737 gltA CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0001512 gltA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299742 gltA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001298 gltA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002384 gltA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000224 gltA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008533 gltA CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0000738 gltA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005796 gltA CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000634 gltA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003643 gltA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008861 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008737 gltA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007449 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076880 gltA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000979 gltA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000874 gltA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009274 gltA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009406 gltA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000631 gltA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005193 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002736 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010982 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008562 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005828 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008747 gltA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005650 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009617 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009384 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009093 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006596 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009546 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009067 gltA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007187 gltA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024707 gltA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009310 gltA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005448 gltA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000999 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000700 gltA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000727 gltA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001016 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000972 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000886 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000795 gltA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000796 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000731 gltA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130648 gltA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005395 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000717 gltA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000783 gltA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001994 gltA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000729 gltA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003638 gltA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005700 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000466 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002899 gltA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000505 gltA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003705 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001220 gltA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003054 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008872 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002892 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291264 gltA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004309 gltA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061608 gltA CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000755 gltA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001562 gltA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003872 gltA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005934 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140001 gltA CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002238 gltA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004942 gltA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002331 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000877 gltA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005099 gltA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002295 gltA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002228 gltA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008656 gltA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005219 gltA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004576 gltA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007181 gltA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005139 gltA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004346 gltA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005160 gltA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008917 gltA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002025 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002013 gltA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002816 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005451 gltA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007973 gltA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004977 gltA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008064 gltA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106796 gltA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083860 gltA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000851 gltA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092740 gltA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008741 gltA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006488 gltA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007178 gltA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004596 gltA CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0007529 gltA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265505 gltA CDS
Person Approved Go view Shigella boydii 227 ADV-0000623 gltA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006035 gltA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006710 gltA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000738 gltA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071580 gltA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086928 gltA CDS
Person Approved Go view Shigella flexneri 8401 BAG-0000649 gltA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000721 gltA CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002168 VC2092 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002477 gltA CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003046 gltA CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0008531 gltA CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003701 gltA CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002152 gltA CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002186 gltA CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236713 gltA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005489 gltA CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000720 gltA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005169 gltA CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002255 gltA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118870 gltA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008008 gltA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004839 gltA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007614 gltA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005415 gltA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032822 gltA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005533 gltA CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003475 gltA CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003110 gltA CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005991 gltA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006884 gltA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001203 gltA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001435 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003539 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010220 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001813 gltA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20222mutantTn5 InsertionRequest the StrainABE-0002451gltAgltA::Tn5KAN-2 at position 774 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 748185 to 759468
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002441ybgOCDScomplement747921748982Downstream
ABE-0002443ybgPCDScomplement748979749707Downstream
ABE-0002446ybgQCDScomplement749722752169Downstream
ABE-0002448ybgDCDScomplement752229752795Downstream
ABE-0002451gltACDScomplement753185754468Matches
ABE-0285807ybgVCDScomplement754658754690Upstream
ABE-0285804ybgUCDScomplement754674754781Upstream
ABE-0002460sdhCCDSforward755177755566Upstream
ABE-0002464sdhDCDSforward755560755907Upstream
ABE-0002466sdhACDSforward755907757673Upstream
ABE-0002468sdhBCDSforward757689758405Upstream
ABE-0285394repeat_regionforward758409758526Upstream
ABE-0002478sucACDSforward758706761507Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.