Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002460 (sdhC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002460 showshow history
Names
sdhC JW0711 ECK0710 cybA b0721
Product
succinate:quinone oxidoreductase membrane protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 755177 755566 390 130
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000283
EnteroFam0002460: Trusted threshold=340.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR014314 (IPR014314 Succinate dehydrogenase, cytochrome b556 subunit) Apr 2008
Automated Process Approved IPR014361 (IPR014361 (DEPRECATED) Succinate dehydrogenase, cytochrome b560 subunit) Apr 2008
Automated Process Approved IPR000701 (IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit) Apr 2008
Automated Process Approved IPR034804 (IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit) Jul 2018
Automated Process Approved PF01127 (PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0045281 succinate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0000104 succinate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sdhC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0710 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0711 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym cybA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0721 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product succinate:quinone oxidoreductase membrane protein Published Annotation - EcoCyc Accession Number: EG10933
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name succinate dehydrogenase, cytochrome b556 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name succinate dehydrogenase, membrane subunit, binds cytochrome b556 Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002460: Trusted threshold=340.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000283
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit Protein Sequence Similarity - InterPro Domain: IPR034804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Protein Sequence Similarity - PFAM Model Name: PF01127
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit Protein Sequence Similarity - InterPro Domain: IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014361 (DEPRECATED) Succinate dehydrogenase, cytochrome b560 subunit Protein Sequence Similarity - InterPro Domain: IPR014361
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014314 Succinate dehydrogenase, cytochrome b556 subunit Protein Sequence Similarity - InterPro Domain: IPR014314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.3.99.1 Published Annotation - Database Name: EC2GO: GO:0000104
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated EC number 1.3.-.- Published Annotation - Database Name: EC2GO: GO:0016627
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69054 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786940 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69054 Published Annotation - Swiss-Prot Accession Number: P69054 Jan 2006
Automated Process Approved db xref GeneID:945316 Published Annotation - Entrez Gene Database ID: 945316
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0002460 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10933 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: TCA cycle Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note succinate dehydrogenase, cytochrome b556; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006099 - tricarboxylic acid cycle; GO_process: GO:0009060 - aerobic respiration; GO_process: GO:0017004 - cytochrome complex assembly Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73815.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0045281 succinate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0000104 succinate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000283 sdhC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001343 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001074 sdhC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001134 sdhC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002283 sdhC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001441 sdhC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003554 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004441 CDS
Person Uncurated Go view Ca. Blochmannia floridanus ACC-0136463 sdhC CDS
Person Uncurated Go view Ca. Blochmannia pennsylvanicus ADF-0000831 sdhC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001523 sdhC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002054 sdhC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007885 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016957 sdhC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001235 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001738 sdhC CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0001513 sdhC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299745 sdhC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001299 sdhC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002383 sdhC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000223 sdhC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008532 sdhC CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0000740 sdhC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005795 CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000635 sdhC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003642 sdhC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008860 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008735 sdhC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007448 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076882 sdhC CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000981 sdhC pseudogene
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000876 sdhC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009272 sdhC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009408 sdhC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000632 sdhC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005194 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002738 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010983 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008563 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005829 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008749 sdhC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005652 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009386 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009095 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006598 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009548 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009064 sdhC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007189 sdhC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024708 sdhC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009309 sdhC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005449 sdhC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001000 sdhC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000701 sdhC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000728 sdhC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001013 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000975 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000883 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000797 sdhC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174888 sdhC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000798 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000733 sdhC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130649 sdhC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005397 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000719 sdhC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001995 sdhC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000730 sdhC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005701 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000506 sdhC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003704 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001221 sdhC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003053 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008873 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004310 sdhC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061609 sdhC CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000780 sdhC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000349 sdhC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003873 sdhC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005935 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140005 sdhC CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002239 sdhC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004943 sdhC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002329 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000879 sdhC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005100 sdhC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002300 sdhC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002232 sdhC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008657 sdhC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005220 sdhC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004577 sdhC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007182 sdhC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005140 sdhC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004347 sdhC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005161 sdhC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008916 sdhC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002023 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002011 sdhC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002815 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005452 sdhC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007972 sdhC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004978 sdhC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008065 sdhC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106800 sdhC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083858 sdhC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000853 sdhC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092754 sdhC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008740 sdhC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006487 sdhC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007179 sdhC CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0007530 sdhC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265506 sdhC CDS
Person Approved Go view Shigella boydii 227 ADV-0000624 sdhC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006036 sdhC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006711 sdhC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000739 sdhC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071579 sdhC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086927 sdhC CDS
Person Approved Go view Shigella flexneri 8401 BAG-0000648 sdhC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000722 sdhC CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002167 VC2091 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135931 sdhC CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000600 sdhC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002479 sdhC CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003045 sdhC CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0008526 cybA CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003702 sdhC CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002153 sdhC CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002185 sdhC CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236708 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005490 sdhC CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000721 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005170 sdhC CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002254 sdhC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118873 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008009 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004838 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007615 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005414 sdhC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032821 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005532 sdhC CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003474 sdhC CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003109 sdhC CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005990 sdhC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006883 sdhC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001204 sdhC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001436 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003538 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010231 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 750177 to 760566
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002446ybgQCDScomplement749722752169Upstream
ABE-0002448ybgDCDScomplement752229752795Upstream
ABE-0002451gltACDScomplement753185754468Upstream
ABE-0285807ybgVCDScomplement754658754690Upstream
ABE-0285804ybgUCDScomplement754674754781Upstream
ABE-0002460sdhCCDSforward755177755566Matches
ABE-0002464sdhDCDSforward755560755907Overlaps Downstream
ABE-0002466sdhACDSforward755907757673Downstream
ABE-0002468sdhBCDSforward757689758405Downstream
ABE-0285394repeat_regionforward758409758526Downstream
ABE-0002478sucACDSforward758706761507Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.