Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002466 (sdhA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002466 showshow history
Names
sdhA JW0713 ECK0712 b0723
Product
succinate:quinone oxidoreductase FAD-binding protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 755907 757673 1767 589
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011281 (IPR011281 Succinate dehydrogenase, flavoprotein subunit) Apr 2008
Automated Process Approved IPR014006 (IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit) Apr 2008
Automated Process Approved IPR004112 (IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal) Apr 2008
Automated Process Approved IPR003952 (IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site) Apr 2008
Automated Process Approved IPR003953 (IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain) Apr 2008
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Apr 2008
Automated Process Approved IPR015939 (IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal) Jul 2018
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR037099 (IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR027477 (IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily) Jul 2018
Automated Process Approved PF00890 (PF00890 FAD binding domain) Jul 2018
Automated Process Approved PF02910 (PF02910 Fumarate reductase flavoprotein C-term) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0022900 electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014006
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015939, IPR014006, IPR011281, IPR037099
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011281
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011281
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011281
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sdhA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK0712 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0713 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0723 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product succinate:quinone oxidoreductase FAD-binding protein Published Annotation - EcoCyc Accession Number: EG10931
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Uncurated alternate product name succinate dehydrogenase, catalytic and NAD/flavoprotein subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name succinate dehydrogenase, flavoprotein subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Automated Process Approved protein family IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR027477
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00890 FAD binding domain Protein Sequence Similarity - PFAM Model Name: PF00890
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011281 Succinate dehydrogenase, flavoprotein subunit Protein Sequence Similarity - InterPro Domain: IPR011281
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR037099
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF02910 Fumarate reductase flavoprotein C-term Protein Sequence Similarity - PFAM Model Name: PF02910
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015939
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Protein Sequence Similarity - InterPro Domain: IPR014006
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Protein Sequence Similarity - InterPro Domain: IPR003953
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site Protein Sequence Similarity - InterPro Domain: IPR003952
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004112
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 1.3.99.1 Published Annotation - Swiss-Prot Accession Number: P0AC41 Feb 2006
Automated Process Uncurated EC number 1.3.-.- Published Annotation - Database Name: EC2GO: GO:0016627
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.6 (metabolism; energy metabolism, carbon; aerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0AC41 Published Annotation - Swiss-Prot Accession Number: P0AC41 Jan 2006
Automated Process Approved db xref GeneID:945402 Published Annotation - Entrez Gene Database ID: 945402
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1786942 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC41 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0002466 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10931 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: TCA cycle Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006099 - tricarboxylic acid cycle; GO_process: GO:0009060 - aerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC73817.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 5.41
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 4.48
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011281
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0022900 electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014006
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009060 aerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015939, IPR014006, IPR011281, IPR037099
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011281
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011281
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001341 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000524 sdhA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000536 sdhA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001153 sdhA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000907 sdhA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003556 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004439 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003050 sdhA CDS
Person Uncurated Go view Ca. Blochmannia floridanus ACC-0136465 sdhA CDS
Person Uncurated Go view Ca. Blochmannia pennsylvanicus ADF-0000837 sdhA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002963 sdhA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001525 sdhA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002056 sdhA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007883 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016955 sdhA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001237 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001740 sdhA CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0001515 sdhA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299752 sdhA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001301 sdhA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002381 sdhA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000221 sdhA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008530 sdhA CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0000742 sdhA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005793 sdhA CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000637 sdhA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003640 sdhA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008858 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008733 sdhA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007446 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076885 sdhA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000983 sdhA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000878 sdhA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009270 sdhA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009410 sdhA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000634 sdhA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005196 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002740 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010986 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008566 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005832 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008752 sdhA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005655 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009389 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009098 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006601 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009551 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009062 sdhA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007192 sdhA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024710 sdhA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009307 sdhA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005451 sdhA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001002 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000703 sdhA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000730 sdhA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001011 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000977 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000881 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000800 sdhA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174890 sdhA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000800 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000735 sdhA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130651 sdhA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005399 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000721 sdhA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000786 sdhA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001997 sdhA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000732 sdhA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003642 sdhA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005703 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000469 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002902 sdhA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000508 sdhA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003702 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001223 sdhA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003051 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008875 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002895 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291268 sdhA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004312 sdhA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061611 sdhA CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000782 sdhA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000351 sdhA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003875 sdhA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005937 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140008 sdhA CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002241 sdhA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004945 sdhA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002327 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000880 sdhA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005102 sdhA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002307 sdhA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002239 sdhA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008659 sdhA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005222 sdhA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004579 sdhA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007184 sdhA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005142 sdhA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004349 sdhA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005163 sdhA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008914 sdhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002021 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002009 sdhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002813 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005454 sdhA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007970 sdhA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004980 sdhA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008067 sdhA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106805 sdhA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083856 sdhA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000855 sdhA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092760 sdhA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008738 sdhA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006485 sdhA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007181 sdhA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004592 sdhA CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0007532 sdhA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265507 sdhA CDS
Person Approved Go view Shigella boydii 227 ADV-0000626 sdhA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006039 sdhA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006714 sdhA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000741 sdhA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071577 sdhA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086925 sdhA CDS
Person Approved Go view Shigella flexneri 8401 BAG-0000646 sdhA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000724 sdhA CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002165 VC2089 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135929 sdhA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000598 sdhA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002482 sdhA CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003043 sdhA CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0008519 sdhA CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003704 sdhA CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002155 sdhA CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002183 sdhA CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236702 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005492 sdhA CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000723 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005172 sdhA CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002252 sdhA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118884 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008011 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004836 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000536 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007617 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005412 sdhA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032819 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005530 sdhA CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003472 sdhA CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003107 sdhA CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005988 sdhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006881 sdhA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001206 sdhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001438 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003536 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010244 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001817 sdhA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 750907 to 762673
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002446ybgQCDScomplement749722752169Upstream
ABE-0002448ybgDCDScomplement752229752795Upstream
ABE-0002451gltACDScomplement753185754468Upstream
ABE-0285807ybgVCDScomplement754658754690Upstream
ABE-0285804ybgUCDScomplement754674754781Upstream
ABE-0002460sdhCCDSforward755177755566Upstream
ABE-0002464sdhDCDSforward755560755907Overlaps Upstream
ABE-0002466sdhACDSforward755907757673Matches
ABE-0002468sdhBCDSforward757689758405Downstream
ABE-0285394repeat_regionforward758409758526Downstream
ABE-0002478sucACDSforward758706761507Downstream
ABE-0002480sucBCDSforward761522762739Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.