Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002478 (sucA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002478 showshow history
Names
sucA JW0715 ECK0714 met lys b0726
Product
2-oxoglutarate decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 758706 761507 2802 934
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000286
EnteroFam0002478: Trusted threshold=2782; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011603 (IPR011603 2-oxoglutarate dehydrogenase E1 component) Apr 2008
Automated Process Approved IPR001017 (IPR001017 Dehydrogenase, E1 component) Apr 2008
Automated Process Approved IPR005475 (IPR005475 Transketolase-like, pyrimidine-binding domain) Apr 2008
Automated Process Approved IPR031717 (IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal) Jul 2018
Automated Process Approved IPR032106 (IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain) Jul 2018
Automated Process Approved IPR029061 (IPR029061 Thiamin diphosphate-binding fold) Jul 2018
Automated Process Approved PF16870 (PF16870 2-oxoglutarate dehydrogenase C-terminal) Jul 2018
Automated Process Approved PF16078 (PF16078 2-oxoglutarate dehydrogenase N-terminus) Jul 2018
Automated Process Approved PF02779 (PF02779 Transketolase, pyrimidine binding domain) Jul 2018
Automated Process Approved PF00676 (PF00676 Dehydrogenase E1 component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sucA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym lys Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0714 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym met Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0715 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0726 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 2-oxoglutarate decarboxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name 2-oxoglutarate decarboxylase, component of the 2-oxoglutarate dehydrogenase complex, thiamin-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 2-oxoglutarate dehydrogenase (decarboxylase component) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002478: Trusted threshold=2782; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000286
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011603 2-oxoglutarate dehydrogenase E1 component Protein Sequence Similarity - InterPro Domain: IPR011603
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001017 Dehydrogenase, E1 component Protein Sequence Similarity - InterPro Domain: IPR001017
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005475 Transketolase-like, pyrimidine-binding domain Protein Sequence Similarity - InterPro Domain: IPR005475
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR031717
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02779 Transketolase, pyrimidine binding domain Protein Sequence Similarity - PFAM Model Name: PF02779
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR032106
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00676 Dehydrogenase E1 component Protein Sequence Similarity - PFAM Model Name: PF00676
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16870 2-oxoglutarate dehydrogenase C-terminal Protein Sequence Similarity - PFAM Model Name: PF16870
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16078 2-oxoglutarate dehydrogenase N-terminus Protein Sequence Similarity - PFAM Model Name: PF16078
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029061 Thiamin diphosphate-binding fold Protein Sequence Similarity - InterPro Domain: IPR029061
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.2.4.- Published Annotation - Database Name: EC2GO: GO:0016624
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.4.2 Published Annotation - Swiss-Prot Accession Number: P0AFG3 Feb 2006
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945303 Published Annotation - Entrez Gene Database ID: 945303
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786945 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFG3 Published Annotation - Swiss-Prot Accession Number: P0AFG3 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFG3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002478 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10979 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: TCA cycle Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of sucB ASAP:2480:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note 2-oxoglutarate dehydrogenase (decarboxylase component); GO_process: GO:0006099 - tricarboxylic acid cycle Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73820.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by dsrA; expression is reduced in strain overexpressing dsrA Experimental - PubMed ID: 15342588
Reference: Escherichia coli K-12 M182 		Oct 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011603
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Approved Go view Buchnera aphidicola APS ABZ-0129572 sucA CDS
Person Approved Go view Buchnera aphidicola Bp ABW-0105006 sucA CDS
Person Approved Go view Buchnera aphidicola Sg [T] ABV-0104412 sucA CDS
Member
Person Approved Go view EnteroFams ADX-0000286 sucA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001339 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000093 sucA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000098 sucA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001209 sucA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000140 sucA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003558 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004437 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003048 sucA CDS
Person Uncurated Go view Ca. Blochmannia floridanus ACC-0136467 sucA CDS
Person Uncurated Go view Ca. Blochmannia pennsylvanicus ADF-0000843 sucA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002961 sucA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001527 sucA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002058 sucA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007881 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016951 sucA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001239 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001742 sucA CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0001517 sucA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299758 sucA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001303 sucA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002379 sucA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008527 sucA CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0000744 sucA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005791 sucA CDS
Person Uncurated Go view Escherichia coli ABU 83972 (UPEC) ANS-0002793 sucA CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000641 sucA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003638 sucA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008856 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008731 sucA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007444 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076887 sucA CDS
Person Uncurated Go view Escherichia coli CI5 (UPEC) AZX-0001792 CDS
Person Uncurated Go view Escherichia coli D i2 (UPEC) AZZ-0000783 sucA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000986 sucA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000881 sucA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009268 sucA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009412 sucA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000636 sucA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005198 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002743 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010989 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008569 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005835 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008755 sucA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005658 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010097 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009392 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009101 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006604 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009554 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009059 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007195 sucA CDS
Person Uncurated Go view Escherichia coli EC958 (UPEC) BCU-0000747 sucA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024713 sucA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009305 sucA_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005453 sucA CDS
Person Uncurated Go view Escherichia coli IAI39 (UPEC) AIB-0000708 sucA CDS
Automated Process Approved Go view Escherichia coli J96 (UPEC) CQK-0001004 CDS
Person Uncurated Go view Escherichia coli JJ1886 (UPEC) BCY-0000718 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000705 sucA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000732 sucA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001009 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000979 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000879 CDS
Person Uncurated Go view Escherichia coli NA114 (UPEC) BDB-0000676 sucA1 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000802 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000802 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000737 sucA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130654 sucA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005402 CDS
Person Uncurated Go view Escherichia coli UMN026 (UPEC) AIA-0000817 sucA CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000723 sucA CDS
Person Uncurated Go view Escherichia coli YD786 (UPEC) BFM-0000231 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000788 sucA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001999 sucA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000734 sucA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003644 sucA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005705 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000471 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002904 sucA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000511 sucA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003700 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001225 sucA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003049 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008877 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002897 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291271 sucA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004314 sucA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061613 sucA CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000765 sucA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000353 sucA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003877 sucA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005939 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140012 sucA CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002243 sucA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004947 sucA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002325 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000883 sucA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005104 sucA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002313 sucA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002245 sucA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008661 sucA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005224 sucA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004581 sucA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007186 sucA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005144 sucA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004351 sucA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005165 sucA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008912 sucA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002019 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002007 sucA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002811 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005456 sucA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007968 sucA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004982 sucA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008069 sucA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106811 sucA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083854 sucA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000857 kgd CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092768 sucA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008736 sucA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006483 sucA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007183 sucA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004590 sucA CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0007534 sucA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265509 sucA CDS
Person Approved Go view Shigella boydii 227 ADV-0000629 sucA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006042 sucA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006716 sucA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000744 sucA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071573 sucA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086922 sucA CDS
Person Approved Go view Shigella flexneri 8401 BAG-0000644 sucA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000727 sucA CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002163 VC2087 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135927 sucA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000596 sucA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002485 sucA CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003041 sucA CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0008513 sucA CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003706 sucA CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002157 sucA CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002181 sucA CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236700 sucA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005494 sucA CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000725 sucA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005174 sucA CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002250 sucA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118890 sucA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008013 sucA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004834 sucA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000533 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007619 sucA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005410 sucA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032817 sucA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005528 sucA CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003470 sucA CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003105 sucA CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005986 sucA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006879 sucA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001208 sucA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001440 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003534 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010251 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001819 sucA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 753706 to 766507
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002451gltACDScomplement753185754468Upstream
ABE-0285807ybgVCDScomplement754658754690Upstream
ABE-0285804ybgUCDScomplement754674754781Upstream
ABE-0002460sdhCCDSforward755177755566Upstream
ABE-0002464sdhDCDSforward755560755907Upstream
ABE-0002466sdhACDSforward755907757673Upstream
ABE-0002468sdhBCDSforward757689758405Upstream
ABE-0285394repeat_regionforward758409758526Upstream
ABE-0002478sucACDSforward758706761507Matches
ABE-0002480sucBCDSforward761522762739Downstream
ABE-0285395repeat_regionforward762762762928Downstream
ABE-0002483sucCCDSforward763014764180Downstream
ABE-0002485sucDCDSforward764180765049Downstream
ABE-0285785sdhXncRNAforward765050765150Downstream
ABE-0002487mngRCDScomplement765153765875Downstream
ABE-0002493mngACDSforward765984767960Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.