Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002480 (sucB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002480 showshow history
Names
sucB JW0716 ECK0715 met lys b0727
Product
dihydrolipoyltranssuccinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 761522 762739 1218 406
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000287
EnteroFam0002480: Trusted threshold=1126.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001078 (IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain) Apr 2008
Automated Process Approved IPR000089 (IPR000089 Biotin/lipoyl attachment) Apr 2008
Automated Process Approved IPR006255 (IPR006255 Dihydrolipoamide succinyltransferase) Apr 2008
Automated Process Approved IPR011053 (IPR011053 Single hybrid motif) Apr 2008
Automated Process Approved IPR003016 (IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site) Apr 2008
Automated Process Approved IPR004167 (IPR004167 Peripheral subunit-binding domain) Apr 2008
Automated Process Approved IPR036625 (IPR036625 E3-binding domain superfamily) Jul 2018
Automated Process Approved PF00198 (PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain)) Jul 2018
Automated Process Approved PF00364 (PF00364 Biotin-requiring enzyme) Jul 2018
Automated Process Approved PF02817 (PF02817 e3 binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0045252 oxoglutarate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016746 acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001078, IPR004167, IPR036625
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sucB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym lys Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym met Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK0715 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0716 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0727 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dihydrolipoyltranssuccinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002480: Trusted threshold=1126.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000287
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR001078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Protein Sequence Similarity - InterPro Domain: IPR003016
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011053 Single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011053
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000089 Biotin/lipoyl attachment Protein Sequence Similarity - InterPro Domain: IPR000089
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004167 Peripheral subunit-binding domain Protein Sequence Similarity - InterPro Domain: IPR004167
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006255 Dihydrolipoamide succinyltransferase Protein Sequence Similarity - InterPro Domain: IPR006255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Protein Sequence Similarity - PFAM Model Name: PF00198
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036625 E3-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036625
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02817 e3 binding domain Protein Sequence Similarity - PFAM Model Name: PF02817
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00364 Biotin-requiring enzyme Protein Sequence Similarity - PFAM Model Name: PF00364
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.3.-.- Published Annotation - Database Name: EC2GO: GO:0016746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.3.1.61 Published Annotation - Swiss-Prot Accession Number: P0AFG6 Feb 2006
Person Uncurated MultiFun 1.3.4 (metabolism; energy metabolism, carbon; tricarboxylic acid cycle) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945307 Published Annotation - Entrez Gene Database ID: 945307
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AFG6 Published Annotation - Swiss-Prot Accession Number: P0AFG6 Jan 2006
Automated Process Approved db xref GI:1786946 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFG6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002480 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10980 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: TCA cycle Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of yedO ASAP:6389:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of sucA ASAP:2478:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component); GO_process: GO:0006099 - tricarboxylic acid cycle Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73821.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006099 tricarboxylic acid cycle Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0045252 oxoglutarate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016746 acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001078, IPR004167, IPR036625
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129573 sucB CDS
Person Approved Go view Buchnera aphidicola Bp ABW-0105007 sucB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104413 sucB CDS
Member
Person Approved Go view EnteroFams ADX-0000287 sucB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001338 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000149 sucB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000169 sucB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001154 sucB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000548 sucB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003559 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004436 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129573 sucB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104413 sucB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003047 sucB CDS
Person Uncurated Go view Ca. Blochmannia floridanus ACC-0136468 sucB CDS
Person Uncurated Go view Ca. Blochmannia pennsylvanicus ADF-0000846 sucB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002960 sucB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001528 sucB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002059 sucB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007880 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016950 sucB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001240 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001743 sucB CDS
Person Uncurated Go view Enterobacter sp. 638 AEL-0001518 sucB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299762 sucB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001304 sucB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002378 sucB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000218 sucB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008526 sucB CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0000745 sucB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005790 sucB CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000642 sucB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003637 sucB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008855 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008730 sucB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007443 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076888 sucB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000987 sucB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000882 sucB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009267 sucB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009413 sucB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000637 sucB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005199 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002744 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010990 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008570 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005836 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008756 sucB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005659 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010098 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009393 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009102 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006605 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009555 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009058 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007196 sucB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024714 sucB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009304 sucB_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005454 sucB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001005 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000706 sucB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000733 sucB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001008 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000980 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000878 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000803 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174894 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000803 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000738 sucB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130655 sucB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005403 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000724 sucB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000789 sucB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002000 sucB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000735 sucB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003645 sucB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005706 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000472 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002905 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000512 sucB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003699 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001226 sucB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003048 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008878 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002898 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291272 sucB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004315 sucB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061614 sucB CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000773 sucB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000354 sucB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003878 sucB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005940 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140015 sucB CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002244 sucB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004948 sucB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002324 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000884 sucB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005105 sucB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002317 sucB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002248 sucB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008662 sucB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005225 sucB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004582 sucB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007187 sucB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005145 sucB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004352 sucB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005166 sucB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008911 sucB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002018 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002006 sucB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002810 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005457 sucB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007967 sucB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004983 sucB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008070 sucB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106813 sucB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083853 sucB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000858 sucB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092771 sucB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008735 sucB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006482 sucB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007184 sucB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004589 sucB CDS
Person Uncurated Go view Serratia proteamaculans 568 AEN-0007535 sucB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265510 sucB CDS
Person Approved Go view Shigella boydii 227 ADV-0000630 sucB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006043 sucB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006717 sucB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000745 sucB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071572 sucB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086921 sucB CDS
Person Approved Go view Shigella flexneri 8401 BAG-0000643 sucB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000728 sucB CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002162 VC2086 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135926 sucB CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000595 sucB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002487 sucB CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003040 sucB CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0008509 sucB CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003707 sucB CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002158 sucB CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002180 sucB CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236699 sucB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005495 sucB CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000726 sucB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005175 sucB CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002249 sucB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118892 sucB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008014 sucB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004833 sucB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000532 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007620 sucB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005409 sucB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032816 sucB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005527 sucB CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003469 sucB CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003104 sucB CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005985 sucB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006878 sucB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001209 sucB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001441 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003533 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010259 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001820 sucB CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0002480 sucB lambda repressor assay Doodle - bnumber: b0727 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 756522 to 767739
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002466sdhACDSforward755907757673Upstream
ABE-0002468sdhBCDSforward757689758405Upstream
ABE-0285394repeat_regionforward758409758526Upstream
ABE-0002478sucACDSforward758706761507Upstream
ABE-0002480sucBCDSforward761522762739Matches
ABE-0285395repeat_regionforward762762762928Downstream
ABE-0002483sucCCDSforward763014764180Downstream
ABE-0002485sucDCDSforward764180765049Downstream
ABE-0285785sdhXncRNAforward765050765150Downstream
ABE-0002487mngRCDScomplement765153765875Downstream
ABE-0002493mngACDSforward765984767960Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.