Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002495 (mngB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002495 showshow history
Names
mngB ybgG JW0721 ECK0720 b0732
Product
alpha-mannosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 767978 770611 2634 878
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011682 (IPR011682 Glycosyl hydrolase family 38, C-terminal) Apr 2008
Automated Process Approved IPR000602 (IPR000602 Glycoside hydrolase family 38, N-terminal domain) Apr 2008
Automated Process Approved IPR015341 (IPR015341 Glycoside hydrolase family 38, central domain) Jul 2018
Automated Process Approved IPR011013 (IPR011013 Galactose mutarotase-like domain superfamily) Jul 2018
Automated Process Approved IPR011330 (IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel) Jul 2018
Automated Process Approved IPR028995 (IPR028995 Glycoside hydrolase families 57/38, central domain superfamily) Jul 2018
Automated Process Approved PF01074 (PF01074 Glycosyl hydrolases family 38 N-terminal domain) Jul 2018
Automated Process Approved PF09261 (PF09261 Alpha mannosidase middle domain) Jul 2018
Automated Process Approved PF07748 (PF07748 Glycosyl hydrolases family 38 C-terminal domain) Jul 2018
Automated Process Uncurated GH38 (GH38 Glycoside Hydrolase Family 38) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006013 mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0030246 carbohydrate binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011013
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011013, IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015923 mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004559 alpha-mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name mngB Published Annotation - PubMed ID: 14645248
Reference: Escherichia coli K-12 		Mar 2008
Person Approved synonym JW0721 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybgG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK0720 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0732 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product alpha-mannosidase Experimental - PubMed ID: 14645248
Reference: Escherichia coli K-12 		Mar 2008
Protein Family
Automated Process Approved protein family IPR011013 Galactose mutarotase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011013
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015341 Glycoside hydrolase family 38, central domain Protein Sequence Similarity - InterPro Domain: IPR015341
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011682 Glycosyl hydrolase family 38, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011682
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000602 Glycoside hydrolase family 38, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR000602
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH38 Glycoside Hydrolase Family 38 Protein Sequence Similarity - CAZy Model Name: GH38
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Protein Sequence Similarity - InterPro Domain: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09261 Alpha mannosidase middle domain Protein Sequence Similarity - PFAM Model Name: PF09261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01074 Glycosyl hydrolases family 38 N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF01074
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07748 Glycosyl hydrolases family 38 C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF07748
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR028995 Glycoside hydrolase families 57/38, central domain superfamily Protein Sequence Similarity - InterPro Domain: IPR028995
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.2.1.24 Published Annotation - Database Name: EC2GO: GO:0004559
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 3.2.1.- Protein Sequence Similarity - InterPro Domain: IPR011682
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786952 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P54746 Published Annotation - Swiss-Prot Accession Number: P54746 Jan 2005
Automated Process Approved db xref EcoGene:EG13236 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945359 Published Annotation - Entrez Gene Database ID: 945359
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P54746 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002495 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative sugar hydrolase; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73826.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006013 mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0030246 carbohydrate binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011013
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011013, IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015923 mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004559 alpha-mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006334 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005098 mngB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004653 mngB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007884 mngB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004159 mngB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003039 mngB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001554 mngB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001749 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008521 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005785 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008850 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008724 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007438 MngB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000992 mngB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000887 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009419 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005204 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000711 mngB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000738 mngB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001003 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000985 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000873 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000808 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003650 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071567 ybgG CDS
Person Approved Go view Shigella flexneri 301 ABT-0086916 ybgG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000638 ybgG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 762978 to 775611
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002483sucCCDSforward763014764180Upstream
ABE-0002485sucDCDSforward764180765049Upstream
ABE-0285785sdhXncRNAforward765050765150Upstream
ABE-0002487mngRCDScomplement765153765875Upstream
ABE-0002493mngACDSforward765984767960Upstream
ABE-0002495mngBCDSforward767978770611Matches
ABE-0285396repeat_regionforward770675770773Downstream
ABE-0002499cydACDSforward771458773026Downstream
ABE-0002501cydBCDSforward773042774181Downstream
ABE-0285036cydXCDSforward774196774309Downstream
ABE-0002505ybgECDSforward774309774602Downstream
ABE-0002508ybgCCDSforward774752775156Downstream
ABE-0002511tolQCDSforward775153775845Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.