Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002501 (cydB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002501 showshow history
Names
cydB JW0723 ECK0722 b0734
Product
cytochrome bd-I ubiquinol oxidase subunit II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 773042 774181 1140 380
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003317 (IPR003317 Cytochrome ubiquinol oxidase subunit 2) Apr 2008
Automated Process Approved PF02322 (PF02322 Cytochrome bd terminal oxidase subunit II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003317
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cydB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK0722 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0723 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0734 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cytochrome bd-I ubiquinol oxidase subunit II Published Annotation - EcoCyc Accession Number: EG10174
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name cytochrome d terminal oxidase, polypeptide subunit II Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name cytochrome d terminal oxidase polypeptide subunit II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name cytochrome d terminal oxidase, subunit II Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF02322 Cytochrome bd terminal oxidase subunit II Protein Sequence Similarity - PFAM Model Name: PF02322
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003317 Cytochrome ubiquinol oxidase subunit 2 Protein Sequence Similarity - InterPro Domain: IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.10.3.- Published Annotation - Swiss-Prot Accession Number: P0ABK2 Feb 2006
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABK2 Published Annotation - Swiss-Prot Accession Number: P0ABK2 Jan 2006
Automated Process Approved db xref EcoGene:EG10174 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945347 Published Annotation - Entrez Gene Database ID: 945347
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786954 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABK2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002501 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note cytochrome d terminal oxidase polypeptide subunit II; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73828.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003317
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001335 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001708 cydB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001503 cydB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001528 cydB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000689 cydB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003563 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004432 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003036 cydB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002954 cydB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001556 cydB_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002076 cydB_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007876 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017460 cydB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001245 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001751 cydB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002374 cydB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000210 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008518 cydB1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000751 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005782 cydB CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0005228 cydB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003630 cydB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008848 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008721 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007435 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076896 cydB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000995 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000890 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009422 cydB1 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000649 cydB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005208 cydB CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002761 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0011007 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008587 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005853 cydB1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005676 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010115 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009412 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009119 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006622 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009041 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007214 cydB1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024734 cydB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009297 cydB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005466 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001011 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0000713 cydB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000740 cydB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001000 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000988 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000870 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000808 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174901 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000811 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000755 cydB1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130672 cydB CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005419 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000731 cydB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000793 cydB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002005 cydB CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000739 cydB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003652 cydB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005710 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000476 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002909 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000517 cydB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003693 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001231 cydB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003044 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008882 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002902 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291276 cydB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004319 cydb1 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061618 cydB1 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004518 cydB1 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002668 cydB1 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004545 cydB1 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005946 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004955 cydB1 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002307 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000889 cydB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005111 cydB1 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002335 cydB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002266 cydB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008669 cydB1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005233 cydB1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004590 cydB1 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007195 cydB1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005152 cydB1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004359 cydB1 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005174 cydB1 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008904 cydB1 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002014 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002002 cydB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002799 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005462 cydB1 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007959 cydB1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004989 cydB1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008076 cydB1 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106827 cydB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083849 cydB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000864 cydB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092788 cydB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008728 cydB1 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006475 cydB1 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007192 cydB1 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004584 cydB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266909 cydB CDS
Person Approved Go view Shigella boydii 227 ADV-0000639 cydB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006052 cydB1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006725 cydB1 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000764 cydB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071564 cydB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086914 cydB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000636 cydB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000736 cydB CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0001917 VC1843 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002495 cydB CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003035 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0008488 cydB CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003712 cydB CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0002163 cydB CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003649 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236678 cydB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005499 cydB CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000730 cydB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005179 cydB CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002245 cydB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118914 cydB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008018 cydB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004829 cydB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007624 cydB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005405 cydB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032812 cydB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005523 cydB CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003465 cydB CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003099 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005981 cydB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0006873 cydB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001213 cydB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001445 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003529 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010277 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001824 cydB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 768042 to 779181
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002495mngBCDSforward767978770611Upstream
ABE-0285396repeat_regionforward770675770773Upstream
ABE-0002499cydACDSforward771458773026Upstream
ABE-0002501cydBCDSforward773042774181Matches
ABE-0285036cydXCDSforward774196774309Downstream
ABE-0002505ybgECDSforward774309774602Downstream
ABE-0002508ybgCCDSforward774752775156Downstream
ABE-0002511tolQCDSforward775153775845Downstream
ABE-0002513tolRCDSforward775849776277Downstream
ABE-0002515tolACDSforward776342777607Downstream
ABE-0002517tolBCDSforward777740779032Downstream
ABE-0002521palCDSforward779067779588Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.