Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002547 (pnuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002547 showshow history
Names
pnuC JW0734 ECK0740 b0751
Product
nicotinamide riboside transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 783166 783885 720 240
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000299
EnteroFam0002547: Trusted threshold=611.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006419 (IPR006419 Nicotinamide mononucleotide transporter PnuC) Apr 2008
Automated Process Approved PF04973 (PF04973 Nicotinamide mononucleotide transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0034258 nicotinamide riboside transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0034257 nicotinamide riboside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pnuC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0734 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0740 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0751 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product nicotinamide riboside transporter Published Annotation - EcoCyc Accession Number: EG11700
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name required for NMN transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name nucleoside/purine/pyrimidine transport protein (NMN family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name predicted nicotinamide mononucleotide transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002547: Trusted threshold=611.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000299
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF04973 Nicotinamide mononucleotide transporter Protein Sequence Similarity - PFAM Model Name: PF04973
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006419 Nicotinamide mononucleotide transporter PnuC Protein Sequence Similarity - InterPro Domain: IPR006419
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 3.1.3.5 Protein Sequence Similarity - InterPro Domain: IPR006419
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.9.A.4 (transport; Transporters of Unknown Classification; recognized transporters of unknown biochemical mechanism; The Nicotinamide Mononucleotide (NMN) Uptake Permease (PnuC) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.144 (transport; substrate; nicotinamide mononucleotide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945350 Published Annotation - Entrez Gene Database ID: 945350
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AFK2 Published Annotation - Swiss-Prot Accession Number: P0AFK2 Jan 2006
Automated Process Approved db xref GI:1786965 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFK2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002547 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11700 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Nucleosides, purines, pyrimidines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note required for NMN transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73838.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0034258 nicotinamide riboside transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0034257 nicotinamide riboside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000299 pnuC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001326 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000187 pnuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000503 pnuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001523 pnuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000199 pnuC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003576 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004418 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003023 pnuC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002943 pnuC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001572 pnuC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002092 pnuC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007858 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020545 pnuC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001259 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005183 pnuC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299828 pnuC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001328 pnuC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002356 pnuC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000193 pnuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009120 pnuC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000769 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005764 pnuC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000657 pnuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003619 pnuC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008824 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009504 pnuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008849 PnuC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076917 pnuC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001013 pnuC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000908 pnuC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007978 pnuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009436 pnuC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000668 pnuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005224 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001905 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009556 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008605 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005870 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008356 pnuC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005693 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009082 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009429 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010954 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006639 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008530 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007231 pnuC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024750 pnuC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009447 pnuC_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005484 pnuC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001023 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000723 pnuC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000758 pnuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001112 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001002 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000965 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000828 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174912 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000828 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000773 pnuC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130688 pnuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005430 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000750 pnuC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000804 pnuC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002834 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000757 pnuC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003663 pnuC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005727 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000489 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000666 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000533 pnuC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003678 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001247 pnuC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003027 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008896 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002915 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291291 pnuC pseudogene
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004336 pnuC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061633 pnuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000801 pnuC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002670 pnuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004109 pnuC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005965 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140111 pnuC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004971 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002291 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000906 pnuC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005126 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002384 pnuC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002309 pnuC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008685 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005249 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004606 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007212 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005167 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004375 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005191 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009299 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001998 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001986 pnuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002780 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005478 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005880 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005005 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006028 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106845 pnuC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083835 pnuC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000883 pnuC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092827 pnuC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008712 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006459 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008462 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004574 pnuC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266310 CDS
Person Approved Go view Shigella boydii 227 ADV-0000652 pnuC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006069 pnuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007971 pnuC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000778 pnuC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071549 pnuC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086901 pnuC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000623 pnuC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000754 pnuC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002514 pnuC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002921 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008454 pnuC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002348 pnuC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003623 pnuC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003139 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236645 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005514 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000746 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005193 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002235 pnuC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118952 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008031 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004815 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003364 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007638 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005391 pnuC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032798 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005509 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003449 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003082 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005967 pnuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006854 pnuC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001231 pnuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001466 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003507 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010316 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004646 pnuC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 778166 to 788885
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002517tolBCDSforward777740779032Upstream
ABE-0002521palCDSforward779067779588Upstream
ABE-0002523cpoBCDSforward779598780389Upstream
ABE-0002525lysTtRNAforward780554780629Upstream
ABE-0002527valTtRNAforward780765780840Upstream
ABE-0002529lysWtRNAforward780843780918Upstream
ABE-0002531valZtRNAforward781068781143Upstream
ABE-0002533lysYtRNAforward781147781222Upstream
ABE-0002535lysZtRNAforward781369781444Upstream
ABE-0002537lysQtRNAforward781577781652Upstream
ABE-0002541nadACDSforward782085783128Upstream
ABE-0002547pnuCCDSforward783166783885Matches
ABE-0002549zitBCDScomplement783882784823Overlaps Downstream
ABE-0002553ybgSCDScomplement784937785317Downstream
ABE-0002560aroGCDSforward785633786685Downstream
ABE-0285397repeat_regionforward786735786769Downstream
ABE-0002563gpmACDScomplement786843787595Downstream
ABE-0002566galMCDScomplement787797788837Downstream
ABE-0002568galKCDScomplement788831789979Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.