Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002549 (zitB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002549 showshow history
Names
zitB ybgR JW0735 ECK0741 b0752
Product
Zn2+/Cd2+/Ni2+/Cu2+ exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 783882 784823 942 314
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000300
EnteroFam0002549: Trusted threshold=758.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002524 (IPR002524 Cation efflux protein) Apr 2008
Automated Process Approved IPR000187 (IPR000187 Corticotropin-releasing factor) Apr 2008
Automated Process Approved IPR027469 (IPR027469 Cation efflux transmembrane domain superfamily) Jul 2018
Automated Process Approved IPR036837 (IPR036837 Cation efflux protein, cytoplasmic domain superfamily) Jul 2018
Automated Process Approved PF01545 (PF01545 Cation efflux family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005576 extracellular region GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005179 hormone activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name zitB Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0735 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybgR Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK0741 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0752 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product Zn2+/Cd2+/Ni2+/Cu2+ exporter Published Annotation - EcoCyc Accession Number: G6393
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name zinc efflux system Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name Zn(II) transport protein (CDF family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002549: Trusted threshold=758.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000300
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000187 Corticotropin-releasing factor Protein Sequence Similarity - InterPro Domain: IPR000187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01545 Cation efflux family Protein Sequence Similarity - PFAM Model Name: PF01545
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002524 Cation efflux protein Protein Sequence Similarity - InterPro Domain: IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036837 Cation efflux protein, cytoplasmic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036837
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027469 Cation efflux transmembrane domain superfamily Protein Sequence Similarity - InterPro Domain: IPR027469
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.2.A.4 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Cation Diffusion Facilitator (CDF) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13662 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002549 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P75757 Published Annotation - Swiss-Prot Accession Number: P75757 Jan 2005
Automated Process Approved db xref GI:1786966 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945348 Published Annotation - Entrez Gene Database ID: 945348
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P75757 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative transport system permease protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73839.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005576 extracellular region GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002524
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005179 hormone activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000187
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000300 zitB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002114 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001914 zitB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002078 zitB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002247 zitB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002106 zitB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003577 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003022 zitB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002942 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001573 zitB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002093 zitB CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020546 zitB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299831 zitB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001329 ybgR CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002355 zitB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000192 zitB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009119 zitB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000770 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005763 zitB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000658 ybgR CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003618 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008823 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009503 zitB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008848 ZitB CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081780 zitB pseudogene
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001014 zitB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000909 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007979 zitB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009437 zitB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000669 zitB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005225 zitB CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0001906 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009557 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008606 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005871 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008357 zitB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005694 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009081 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009430 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006640 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008917 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008529 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007232 zitB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024751 zitB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009448 zitB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005485 zitB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001024 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0000724 zitB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000759 zitB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001111 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001003 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000964 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174913 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000829 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130689 zitB CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005431 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000751 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000805 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002017 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000758 ybgR CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003664 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000490 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000667 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000534 zitB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003677 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001248 zitB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003026 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008897 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002916 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291292 zitB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004337 ybgR CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061634 zitB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000795 zitB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004110 zitB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005966 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004972 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002290 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000907 zitB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005127 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002387 ybgR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002312 ybgR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008686 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005250 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004607 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007213 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005168 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004376 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005192 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009298 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001997 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001985 zitB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002779 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005879 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005006 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006029 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106846 zitB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083834 zitB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000884 ybgR CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092829 zitB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008711 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006458 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008463 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004573 CDS
Person Approved Go view Shigella boydii 227 ADV-0000653 ybgR CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006070 zitB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007972 zitB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000779 ybgR CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071548 zitB CDS
Person Approved Go view Shigella flexneri 301 ABT-0086900 zitB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000622 ybgR CDS
Person Approved Go view Shigella sonnei 046 ADD-0000755 zitB CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002920 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0008449 CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002347 zitB CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0003622 zitB CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003138 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236638 zitB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005515 zitB CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000747 zitB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005194 zitB CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002234 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118960 zitB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008032 zitB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004814 zitB CDS
Automated Process Approved Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003363 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007639 zitB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005390 zitB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032797 zitB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005508 zitB CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003448 zitB CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003081 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005966 zitB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0006853 zitB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001232 zitB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001467 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003506 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010318 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004645 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 778882 to 789823
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002517tolBCDSforward777740779032Downstream
ABE-0002521palCDSforward779067779588Downstream
ABE-0002523cpoBCDSforward779598780389Downstream
ABE-0002525lysTtRNAforward780554780629Downstream
ABE-0002527valTtRNAforward780765780840Downstream
ABE-0002529lysWtRNAforward780843780918Downstream
ABE-0002531valZtRNAforward781068781143Downstream
ABE-0002533lysYtRNAforward781147781222Downstream
ABE-0002535lysZtRNAforward781369781444Downstream
ABE-0002537lysQtRNAforward781577781652Downstream
ABE-0002541nadACDSforward782085783128Downstream
ABE-0002547pnuCCDSforward783166783885Overlaps Downstream
ABE-0002549zitBCDScomplement783882784823Matches
ABE-0002553ybgSCDScomplement784937785317Upstream
ABE-0002560aroGCDSforward785633786685Upstream
ABE-0285397repeat_regionforward786735786769Upstream
ABE-0002563gpmACDScomplement786843787595Upstream
ABE-0002566galMCDScomplement787797788837Upstream
ABE-0002568galKCDScomplement788831789979Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.