Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002563 (gpmA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002563 showshow history
Names
gpmA gpm JW0738 ECK0744 b0755
Product
phosphoglyceromutase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 786843 787595 753 251
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000301
EnteroFam0002563: Trusted threshold=742.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005952 (IPR005952 Phosphoglycerate mutase 1) Apr 2008
Automated Process Approved IPR001345 (IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site) Apr 2008
Automated Process Approved IPR013078 (IPR013078 Histidine phosphatase superfamily, clade-1) Apr 2008
Automated Process Approved IPR029033 (IPR029033 Histidine phosphatase superfamily) Jul 2018
Automated Process Approved PF00300 (PF00300 Histidine phosphatase superfamily (branch 1)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005952
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004619 phosphoglycerate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005952
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016868 intramolecular transferase activity, phosphotransferases GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005952
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gpmA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0738 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0744 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym gpm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0755 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoglyceromutase 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoglyceromutase 1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002563: Trusted threshold=742.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000301
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR029033 Histidine phosphatase superfamily Protein Sequence Similarity - InterPro Domain: IPR029033
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00300 Histidine phosphatase superfamily (branch 1) Protein Sequence Similarity - PFAM Model Name: PF00300
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013078 Histidine phosphatase superfamily, clade-1 Protein Sequence Similarity - InterPro Domain: IPR013078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Protein Sequence Similarity - InterPro Domain: IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005952 Phosphoglycerate mutase 1 Protein Sequence Similarity - InterPro Domain: IPR005952
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 5.4.2.- Published Annotation - Database Name: EC2GO: GO:0016868
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 5.4.2.11 Protein Sequence Similarity - Swiss-Prot Accession Number: P62709
Reference: Escherichia coli 		Mar 2014
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786970 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P62707 Published Annotation - Swiss-Prot Accession Number: P62707 Jan 2006
Automated Process Approved db xref GeneID:945068 Published Annotation - Entrez Gene Database ID: 945068
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P62707 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002563 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11699 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006096 - glycolysis; GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73842.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005952
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0004619 phosphoglycerate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005952
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016868 intramolecular transferase activity, phosphotransferases GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005952
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000301 gpmA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001324 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000433 gpmA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000509 gpmA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000721 gpmA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001453 gpmA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003579 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004415 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129574 gpmA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105009 gpmA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104414 gpmA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003019 gpmA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002939 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001576 gpmA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002096 gpmA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007856 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020551 gpmA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001261 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001764 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299845 gpmA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001337 gpmA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002350 gpmA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000190 gpmA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009116 gpmA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000773 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005760 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000661 gpmA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003615 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008819 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009500 gpmA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008843 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076922 gpmA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001017 gpmA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000912 gpmA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007982 gpmA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009440 gpmA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000672 gpmA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005228 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001909 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009560 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008609 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005874 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008360 gpmA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005697 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009078 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008974 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006643 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008920 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008526 gpmA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007235 gpmA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024754 gpmA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009451 gpmA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005488 gpmA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001027 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000727 gpmA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000762 gpmA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001107 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001007 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000960 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000832 gpmA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174916 gpmA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000832 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000777 gpmA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130692 gpmA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005434 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000754 gpmA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000810 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002020 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000770 gpmA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003667 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005729 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000495 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000672 gpmA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000539 gpmA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003672 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001253 gpmA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003021 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008909 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002921 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287549 gpmA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004342 gpma1 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061636 gpmA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000794 gpmA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000367 gpmA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004116 gpmA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005968 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140118 gpmA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004986 gpmA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002285 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000925 gpmA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005141 gpmA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002432 gpmA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002356 gpmA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008120 gpmA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005264 gpmA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004621 gpmA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007218 gpmA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005182 gpmA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004390 gpmA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005206 gpmA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007731 gpmA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001992 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001980 gpmA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002763 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005493 gpmA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005864 gpmA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005011 gpmA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006034 gpmA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106858 gpmA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083829 gpmA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000898 gpmA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092862 gpmA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008697 gpmA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006444 gpmA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008477 gpmA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004567 CDS
Person Approved Go view Shigella boydii 227 ADV-0000656 gpmA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006073 gpmA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007975 gpmA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000786 gpmA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071544 gpmA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086897 gpmA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000619 gpmA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000758 gpmA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000375 gpmA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002519 gpmA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002918 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008444 gpm CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002345 gpmA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003618 gpmA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003136 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236636 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005517 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001267 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005196 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002231 gpmA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118979 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008037 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004809 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003358 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007644 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005388 gpmA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032795 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005503 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003446 gpmA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003079 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006351 gpmA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006851 gpmA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001234 gpmA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001470 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003502 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010324 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004643 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20230mutantTn5 InsertionRequest the StrainABE-0002563gpmAgpmA::Tn5KAN-2 at position 160 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 781843 to 792595
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002541nadACDSforward782085783128Downstream
ABE-0002547pnuCCDSforward783166783885Downstream
ABE-0002549zitBCDScomplement783882784823Downstream
ABE-0002553ybgSCDScomplement784937785317Downstream
ABE-0002560aroGCDSforward785633786685Downstream
ABE-0285397repeat_regionforward786735786769Downstream
ABE-0002563gpmACDScomplement786843787595Matches
ABE-0002566galMCDScomplement787797788837Upstream
ABE-0002568galKCDScomplement788831789979Upstream
ABE-0002573galTCDScomplement789983791029Upstream
ABE-0002575galECDScomplement791039792055Upstream
ABE-0285398repeat_regionforward792264792297Upstream
ABE-0002582modFCDScomplement792316793788Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.