Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002573 (galT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002573 showshow history
Names
galT JW0741 ECK0747 galB b0758
Product
galactose-1-phosphate uridylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 789983 791029 1047 349
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000303
EnteroFam0002573: Trusted threshold=963.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001937 (IPR001937 Galactose-1-phosphate uridyl transferase, class I) Apr 2008
Automated Process Approved IPR005849 (IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal) Apr 2008
Automated Process Approved IPR005850 (IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal) Apr 2008
Automated Process Approved IPR036265 (IPR036265 HIT-like superfamily) Jul 2018
Automated Process Approved PF01087 (PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain) Jul 2018
Automated Process Approved PF02744 (PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006012 galactose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0033499 galactose catabolic process via UDP-galactose GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001937
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001937
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005849, IPR005850, IPR001937
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name galT Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0741 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0747 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym galB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b0758 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product galactose-1-phosphate uridylyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002573: Trusted threshold=963.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000303
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001937 Galactose-1-phosphate uridyl transferase, class I Protein Sequence Similarity - InterPro Domain: IPR001937
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF01087
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036265 HIT-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036265
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005850
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.12 Published Annotation - Swiss-Prot Accession Number: P09148 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.5 (cell processes; adaptation to stress; dessication) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.7 (metabolism; central intermediary metabolism; galactose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945357 Published Annotation - Entrez Gene Database ID: 945357
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P09148 Published Annotation - Swiss-Prot Accession Number: P09148 Jan 2005
Automated Process Approved db xref GI:1786973 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09148 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002573 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10366 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0006012 - galactose metabolic process; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73845.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0033499 galactose catabolic process via UDP-galactose GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001937
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006012 galactose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005849, IPR005850, IPR001937
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001937
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000303 galT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000999 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001513 galT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001702 galT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002216 galT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001728 galT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002326 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001444 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003016 galT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002936 galT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001579 galT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002099 galT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007843 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020560 galT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001269 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001767 galT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299857 galT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001340 galT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002347 galT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000179 galT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009113 galT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000776 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005756 galT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000664 galT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003612 galT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008816 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009497 galT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008840 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076925 galT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001020 galT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000915 galT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007986 galT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009443 galT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000675 galT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005231 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001912 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009564 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008613 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005878 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008364 galT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005701 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009074 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009437 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008978 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006647 galT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008924 galT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008522 galT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007239 galT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024757 galT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009454 galT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005491 galT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001030 CDS
Automated Process Uncurated Go view Escherichia coli K-12 DH10B AEC-0004428 galT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000765 galT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001104 galT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001010 galT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000957 galT CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000835 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174919 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000835 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000780 galT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130695 galT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005438 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000757 galT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000814 galT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003688 galT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000774 galT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003671 galT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005742 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000498 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000675 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000542 galT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003669 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001256 galT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003018 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008912 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002924 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287546 galT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004345 galT CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063459 galT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001806 galT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000818 galT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000437 galT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008027 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138075 galT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004989 galT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002278 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000928 galT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005144 galT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002443 galT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002367 galT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008117 galT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005267 galT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004624 galT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007221 galT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005185 galT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004393 galT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005209 galT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007734 galT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001989 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001977 galT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002759 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005496 galT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005861 galT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005014 galT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006037 galT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106868 galT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083826 galT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000902 galT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092870 galT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008694 galT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006441 galT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008480 galT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004563 galT CDS
Person Approved Go view Shigella boydii 227 ADV-0000659 galT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006076 galT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007978 galT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000789 galT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071541 galT CDS
Person Approved Go view Shigella flexneri 301 ABT-0086894 galT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000616 galT CDS
Person Approved Go view Shigella sonnei 046 ADD-0000761 galT CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001668 VC1596 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002914 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008425 galB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002339 galB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003614 galT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003132 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236630 galT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005522 galT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001273 galT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005202 galT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002228 galT CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118990 galT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008042 galT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004805 galT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003280 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007649 galT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005383 galT CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032791 galT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005499 galT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003440 galT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003073 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006347 galT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006846 galT CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001238 galT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001475 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003497 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010338 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004640 galT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 784983 to 796029
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002553ybgSCDScomplement784937785317Downstream
ABE-0002560aroGCDSforward785633786685Downstream
ABE-0285397repeat_regionforward786735786769Downstream
ABE-0002563gpmACDScomplement786843787595Downstream
ABE-0002566galMCDScomplement787797788837Downstream
ABE-0002568galKCDScomplement788831789979Downstream
ABE-0002573galTCDScomplement789983791029Matches
ABE-0002575galECDScomplement791039792055Upstream
ABE-0285398repeat_regionforward792264792297Upstream
ABE-0002582modFCDScomplement792316793788Upstream
ABE-0002585modECDScomplement793856794644Upstream
ABE-0002595acrZCDSforward794773794922Upstream
ABE-0002601modACDSforward795089795862Upstream
ABE-0002603modBCDSforward795862796551Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.