Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002575 (galE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002575 showshow history
Names
galE galD JW0742 ECK0748 b0759
Product
UDP-glucose-4-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 791039 792055 1017 339
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000304
EnteroFam0002575: Trusted threshold=934.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005886 (IPR005886 UDP-glucose 4-epimerase) Apr 2008
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Apr 2008
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF16363 (PF16363 GDP-mannose 4,6 dehydratase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006012 galactose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006012 galactose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003978 UDP-glucose 4-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name galE Published Sequence Analysis - PubMed ID: 3022232
Reference: Escherichia coli 		Feb 2007
Person Approved synonym ECK0748 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0742 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym galD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b0759 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-glucose-4-epimerase Published Annotation - PubMed ID: 8647345
Reference: Escherichia coli 		Feb 2007
Person Approved alternate product name UDP-galactose-4-epimerase Experimental - PubMed ID: 1100620
Reference: Escherichia coli 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0002575: Trusted threshold=934.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000304
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF16363 GDP-mannose 4,6 dehydratase Protein Sequence Similarity - PFAM Model Name: PF16363
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005886 UDP-glucose 4-epimerase Protein Sequence Similarity - InterPro Domain: IPR005886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.1.3.2 Published Annotation - Swiss-Prot Accession Number: P09147 Feb 2006
Person Uncurated MultiFun 1.5.3.7 (metabolism; building block biosynthesis; cofactor, small molecule carrier; nicotinamide adenine dinucleotide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.7 (metabolism; central intermediary metabolism; galactose metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.3 (cell structure; surface antigens (ECA, O antigen of LPS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.5 (cell processes; adaptation to stress; dessication) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10362 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945354 Published Annotation - Entrez Gene Database ID: 945354
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P09147 Published Annotation - Swiss-Prot Accession Number: P09147 Jan 2005
Automated Process Approved db xref GI:1786974 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09147 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002575 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_function: GO:0042280 - cell surface antigen activity, host-interacting; GO_process: GO:0006012 - galactose metabolic process; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009435 - NAD biosynthetic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73846.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006012 galactose metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006012 galactose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0042280 (OBSOLETE) cell surface antigen activity, host-interacting Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003978 UDP-glucose 4-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000304 galE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001323 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000845 galE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000075 galE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000070 galE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000093 galE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003586 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004408 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003015 galE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002935 galE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001580 galE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002100 galE_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007842 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020562 galE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001270 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001768 galE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302821 galE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002419 galE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001387 galE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000178 galE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009112 galE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000777 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005755 galE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000665 galE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003611 galE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008815 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009496 galE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008839 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076926 galE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001021 galE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000916 galE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007987 galE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009444 galE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000676 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005232 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001913 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009565 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008614 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005879 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008365 galE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005702 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009073 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008979 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006648 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008925 galE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008521 galE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007240 galE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024758 galE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009455 galE_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005492 galE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001031 CDS
Automated Process Uncurated Go view Escherichia coli K-12 DH10B AEC-0004429 galE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000766 galE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001103 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001011 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000956 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000836 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174920 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000836 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000781 galE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130696 galE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005439 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000758 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000815 galE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003687 galE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000775 galE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003672 galE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005743 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001862 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001980 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001820 galE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002216 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002564 galE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001582 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010324 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001323 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289529 galE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005732 galE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061643 galE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004032 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000372 galE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004123 galE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005980 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147820 galE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002947 galE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004990 galE CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000929 galE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005145 galE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002447 galE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002371 galE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008116 galE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005268 galE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004625 galE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007222 galE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005186 galE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004394 galE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005210 galE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007735 galE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001988 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001976 galE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002758 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005497 galE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005860 galE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005015 galE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006038 galE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106871 galE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083825 galE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000903 galE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092874 galE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008693 galE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006440 galE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008481 galE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004212 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265230 galE CDS
Person Approved Go view Shigella boydii 227 ADV-0000660 galE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006077 galE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007979 galE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000790 galE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071540 galE CDS
Person Approved Go view Shigella flexneri 301 ABT-0086893 galE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000615 galE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000762 galE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003667 VCA0774 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001792 galE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002913 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008423 galD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002338 galD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003613 galE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003131 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236629 galE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005523 galE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001274 galE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005203 galE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002227 galE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118993 galE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008043 galE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004804 galE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003281 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007650 galE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005382 galE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032790 galE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005498 galE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003439 galE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003072 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006346 galE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006845 galE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001239 galE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001476 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003496 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010343 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004639 galE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20233mutantTn5 InsertionRequest the StrainABE-0002575galEgalE::Tn5KAN-2 at position 824 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 786039 to 797055
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002560aroGCDSforward785633786685Downstream
ABE-0285397repeat_regionforward786735786769Downstream
ABE-0002563gpmACDScomplement786843787595Downstream
ABE-0002566galMCDScomplement787797788837Downstream
ABE-0002568galKCDScomplement788831789979Downstream
ABE-0002573galTCDScomplement789983791029Downstream
ABE-0002575galECDScomplement791039792055Matches
ABE-0285398repeat_regionforward792264792297Upstream
ABE-0002582modFCDScomplement792316793788Upstream
ABE-0002585modECDScomplement793856794644Upstream
ABE-0002595acrZCDSforward794773794922Upstream
ABE-0002601modACDSforward795089795862Upstream
ABE-0002603modBCDSforward795862796551Upstream
ABE-0002605modCCDSforward796554797612Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.