Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002601 (modA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002601 showshow history
Names
modA JW0746 ECK0752 b0763
Product
periplasmic-binding component of an ABC superfamily molybdate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 795089 795862 774 258
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000307
EnteroFam0002601: Trusted threshold=630.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011587 (IPR011587 (DEPRECATED) Prokaryotic extracellular metal-binding protein) Apr 2008
Automated Process Approved IPR005950 (IPR005950 Molybdate ABC transporter, substrate-binding protein) Apr 2008
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Apr 2008
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Apr 2008
Automated Process Approved PF13531 (PF13531 Bacterial extracellular solute-binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015689 molybdate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005950
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011587
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005950
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015412 ABC-type molybdate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005950
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011587
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name modA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW0746 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0752 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0763 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic-binding component of an ABC superfamily molybdate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name molybdate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name molybdate-binding periplasmic protein; permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name molybdate transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002601: Trusted threshold=630.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000307
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13531 Bacterial extracellular solute-binding protein Protein Sequence Similarity - PFAM Model Name: PF13531
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005950 Molybdate ABC transporter, substrate-binding protein Protein Sequence Similarity - InterPro Domain: IPR005950
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011587 (DEPRECATED) Prokaryotic extracellular metal-binding protein Protein Sequence Similarity - InterPro Domain: IPR011587
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.5.3.4 (metabolism; building block biosynthesis; cofactor, small molecule carrier; molybdenum) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.124 (transport; substrate; molybdate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945364 Published Annotation - Entrez Gene Database ID: 945364
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37329 Published Annotation - Swiss-Prot Accession Number: P37329 Jan 2005
Automated Process Approved db xref GI:1786979 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37329 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002601 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12427 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note molybdate-binding periplasmic protein; permease; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73850.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011587
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015689 molybdate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005950
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005950
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015412 ABC-type molybdate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005950
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011587
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000307 modA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001320 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000945 modA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001095 modA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001938 modA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001218 modA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003590 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004403 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001316 modA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002931 modA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001589 modA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002104 modA_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007836 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020567 modA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001274 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001772 modA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299875 modA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001346 modA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002343 modA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000174 modA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009108 modA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000782 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005751 modA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000668 modA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003606 modA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008810 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009492 modA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008835 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076931 modA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001025 modA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000920 modA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007991 modA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009448 modA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000680 modA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005236 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001918 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009569 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008618 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005883 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008369 modA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005706 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009069 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009442 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008983 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006652 modA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008929 modA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008517 modA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007244 modA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024762 modA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009459 modA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005496 modA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001035 modA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000732 modA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000770 modA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001098 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001016 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000951 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000840 modA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174924 modA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000840 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000785 modA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130700 modA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005444 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000763 modA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000819 modA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004832 modA pseudogene
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000779 modA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003676 modA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005748 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000502 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000679 modA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000546 modA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003665 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001260 modA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003014 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008916 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002928 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287542 modA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061647 modA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000803 modA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001565 modA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004127 modA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005985 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140130 modA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004995 modA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002272 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000934 modA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005150 modA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002463 modA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002385 modA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008111 modA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005273 modA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004630 modA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007227 modA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005191 modA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004399 modA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005215 modA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007740 modA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001983 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001971 modA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002752 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005502 modA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005855 modA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005020 modA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006043 modA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106881 modA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083820 modA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000909 modA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092897 modA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008688 modA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006435 modA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008486 modA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004552 modA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267505 modA CDS
Person Approved Go view Shigella boydii 227 ADV-0000664 modA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006081 modA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007983 modA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000794 modA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071535 modA CDS
Person Approved Go view Shigella flexneri 301 ABT-0086889 modA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000611 modA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000766 modA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003616 VCA0726 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002537 modA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002908 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008408 modA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002334 modA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003609 modA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003127 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236611 modA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005529 modA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001281 modA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005209 modA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002222 modA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119013 modA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008049 modA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004798 modA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003496 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007657 modA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005376 modA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032784 modA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005492 modA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003431 modA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003064 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006340 modA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006840 modA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001244 modA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001484 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003487 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010375 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004635 modA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20234mutantTn5 InsertionRequest the StrainABE-0002601modAmodA::Tn5KAN-2 at position 340 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 790089 to 800862
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002573galTCDScomplement789983791029Upstream
ABE-0002575galECDScomplement791039792055Upstream
ABE-0285398repeat_regionforward792264792297Upstream
ABE-0002582modFCDScomplement792316793788Upstream
ABE-0002585modECDScomplement793856794644Upstream
ABE-0002595acrZCDSforward794773794922Upstream
ABE-0002601modACDSforward795089795862Matches
ABE-0002603modBCDSforward795862796551Overlaps Downstream
ABE-0002605modCCDSforward796554797612Downstream
ABE-0002607ybhACDScomplement797613798431Downstream
ABE-0002611pglCDSforward798586799581Downstream
ABE-0002613ybhDCDScomplement799622800575Downstream
ABE-0002618ybhHCDSforward800759801811Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.