Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002605 (modC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002605 showshow history
Names
modC JW0748 ECK0754 narD chlD b0765
Product
ATP-binding component of an ABC superfamily molybdate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 796554 797612 1059 353
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000309
EnteroFam0002605: Trusted threshold=895.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR011868 (IPR011868 Molybdate ABC transporter, ATP-binding protein) Apr 2008
Automated Process Approved IPR004606 (IPR004606 Molybdenum-pterin binding domain) Apr 2008
Automated Process Approved IPR008995 (IPR008995 Molybdate/tungstate binding, C-terminal) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR005116 (IPR005116 Transport-associated OB, type 1) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Automated Process Approved PF03459 (PF03459 TOBE domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO biological process GO:0015689 molybdate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011868
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004606
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015098 molybdate ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name modC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK0754 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym narD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym chlD Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW0748 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0765 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily molybdate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name ATP-binding component of molybdate transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name molybdate transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name molybdate transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0002605: Trusted threshold=895.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000309
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005116 Transport-associated OB, type 1 Protein Sequence Similarity - InterPro Domain: IPR005116
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03459 TOBE domain Protein Sequence Similarity - PFAM Model Name: PF03459
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008995 Molybdate/tungstate binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008995
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011868 Molybdate ABC transporter, ATP-binding protein Protein Sequence Similarity - InterPro Domain: IPR011868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004606 Molybdenum-pterin binding domain Protein Sequence Similarity - InterPro Domain: IPR004606
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 7.3.2.5 Published Annotation - Swiss-Prot Accession Number: P09833
Reference: Escherichia coli K-12 		Dec 2019
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.124 (transport; substrate; molybdate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.4 (metabolism; building block biosynthesis; cofactor, small molecule carrier; molybdenum) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002605 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945362 Published Annotation - Entrez Gene Database ID: 945362
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09833 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786981 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10152 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P09833 Published Annotation - Swiss-Prot Accession Number: P09833 Jan 2005
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of molybdate transport; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006777 - Mo-molybdopterin cofactor biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73852.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006777 Mo-molybdopterin cofactor biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO biological process GO:0015689 molybdate ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011868
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004606
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015098 molybdate ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011868
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000309 modC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001318 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001064 modC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001081 modC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001544 modC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001004 modC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003592 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004401 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001318 modC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002929 modC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001591 modC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002106 modC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007834 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020569 modC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001276 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001774 modC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299882 modC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001348 modC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002341 modC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000172 modC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009106 modC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000784 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005749 modC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000670 modC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003604 modC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008808 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009490 modC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008833 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076933 modC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001027 modC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000922 modC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007993 modC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009450 modC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000682 modC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005238 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001920 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009571 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008620 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005885 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008371 modC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005708 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009067 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009444 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008985 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006654 modC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008931 modC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008515 modC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007246 modC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024764 modC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009461 cysA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005498 modC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001037 modC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000734 modC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000772 modC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001096 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001018 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000949 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000842 modC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174926 modC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000842 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000787 modC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130702 modC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005446 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000765 modC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000821 modC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000781 modC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003678 modC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005751 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000504 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000681 modC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000548 modC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003663 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001262 modC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003012 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008918 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002930 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287540 modC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004350 modC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061649 modC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004036 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001566 modC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004129 modC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005988 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140133 modC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003022 modC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004997 modC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002270 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000936 modC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005152 modC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002472 modC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002394 modC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008109 modC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005275 modC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004632 modC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007229 modC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005193 modC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004401 modC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005217 modC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007742 modC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001981 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001969 modC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002750 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005504 modC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005853 modC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005022 modC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006045 modC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106885 modC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083818 modC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000911 modC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092903 modC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008686 modC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006433 modC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008488 modC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004550 modC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267507 modC CDS
Person Approved Go view Shigella boydii 227 ADV-0000666 modC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0006083 modC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007985 modC CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0000796 modC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071533 modC CDS
Person Approved Go view Shigella flexneri 301 ABT-0086887 modC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000609 modC CDS
Person Approved Go view Shigella sonnei 046 ADD-0000768 modC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003614 VCA0724 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002540 modC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002906 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008400 chlD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002332 modC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003607 modC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003125 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236604 modC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005531 modC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001284 modC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005211 modC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002220 modC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119022 modC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008051 modC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004796 modC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003498 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007659 modC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005374 modC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032782 modC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005490 modC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003429 modC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003062 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006338 modC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006838 modC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001246 modC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001487 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003485 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010384 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004633 modC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20236mutantTn5 InsertionRequest the StrainABE-0002605modCmodC::Tn5KAN-2 at position 605 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 791554 to 802612
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002575galECDScomplement791039792055Upstream
ABE-0285398repeat_regionforward792264792297Upstream
ABE-0002582modFCDScomplement792316793788Upstream
ABE-0002585modECDScomplement793856794644Upstream
ABE-0002595acrZCDSforward794773794922Upstream
ABE-0002601modACDSforward795089795862Upstream
ABE-0002603modBCDSforward795862796551Upstream
ABE-0002605modCCDSforward796554797612Matches
ABE-0002607ybhACDScomplement797613798431Downstream
ABE-0002611pglCDSforward798586799581Downstream
ABE-0002613ybhDCDScomplement799622800575Downstream
ABE-0002618ybhHCDSforward800759801811Downstream
ABE-0002621ybhICDSforward801887803320Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.