Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002611 (pgl) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002611 showshow history
Names
pgl blu JW0750 ECK0756 ybhE b0767
Product
6-phosphogluconolactonase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 798586 799581 996 332
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000311
EnteroFam0002611: Trusted threshold=949.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR019405 (IPR019405 Lactonase, 7-bladed beta propeller) Jul 2018
Automated Process Approved IPR011045 (IPR011045 Nitrous oxide reductase, N-terminal) Jul 2018
Automated Process Approved PF10282 (PF10282 Lactonase, 7-bladed beta-propeller) Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pgl Published Annotation - Swiss-Prot Accession Number: P52697
Reference: Escherichia coli K-12 		Jan 2007
Automated Process Approved synonym blu Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW0750 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0756 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ybhE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b0767 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 6-phosphogluconolactonase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002611: Trusted threshold=949.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000311
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR019405 Lactonase, 7-bladed beta propeller Protein Sequence Similarity - InterPro Domain: IPR019405
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011045 Nitrous oxide reductase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR011045
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF10282 Lactonase, 7-bladed beta-propeller Protein Sequence Similarity - PFAM Model Name: PF10282
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.1.1.31 Published Annotation - Swiss-Prot Accession Number: P52697 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13231 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786983 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002611 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52697 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946398 Published Annotation - Entrez Gene Database ID: 946398
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P52697 Published Annotation - Swiss-Prot Accession Number: P52697 Jan 2005
Person Approved function orf; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative isomerase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73854.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000311 pgl CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001317 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001065 pgl CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001371 pgl CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001104 pgl CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001743 pgl CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129563 ybhE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105000 ybhE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104402 ybhE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001320 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002927 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001593 pgl CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002108 pgl CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007832 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020484 pgl CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001278 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001776 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299893 pgl CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001350 ybhE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002339 pgl CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000170 pgl CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009104 pgl CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000786 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005747 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000672 ybhE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003602 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008806 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009488 pgl CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008831 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076935 pgl CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001029 pgl CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000924 ybhE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007995 pgl CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009452 pgl CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000684 pgl CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005240 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001922 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009573 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008622 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005887 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008373 pgl CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005710 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009065 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008987 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006656 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008933 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008513 pgl CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007248 pgl CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024766 pgl CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009463 pgl CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005500 pgl CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001039 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000736 pgl CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000774 ybhE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001094 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001020 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000947 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000844 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000844 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000789 pgl CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130704 pgl CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005448 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000767 ybhE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000824 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000783 ybhE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003681 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005753 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000506 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000683 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000550 pgl CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003661 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001264 pgl CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003010 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008920 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002932 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287538 pgl CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004352 ybhE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061658 pgl CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000809 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000379 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004138 pgl CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005999 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140139 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004999 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002268 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000938 ybhE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005154 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002481 ybhE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002403 ybhE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008107 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005277 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004634 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007234 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005195 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004403 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005219 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007744 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001979 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001967 pgl CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002748 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005506 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005851 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005024 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006047 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106893 pgl CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083816 pgl CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000913 ybhE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092909 pgl CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008655 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006431 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008490 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004547 CDS
Person Approved Go view Shigella boydii 227 ADV-0000714 ybhE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008002 pgl CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007926 pgl CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002323 ybhE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071952 ybhE CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0255941 ybhE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000793 ybhE CDS
Person Approved Go view Shigella sonnei 046 ADD-0000799 pgl CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002545 ybhE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002404 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008396 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002329 pgl CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003398 pgl CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002896 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236602 pgl CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001286 pgl CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005213 pgl CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002218 pgl CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119029 pgl CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008053 pgl CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004794 pgl CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003500 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007661 pgl CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005372 pgl CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032780 pgl CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005488 pgl CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003427 pgl CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003060 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006336 pgl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006836 pgl CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001248 pgl CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001489 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003483 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010403 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004631 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 793586 to 804581
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002582modFCDScomplement792316793788Upstream
ABE-0002585modECDScomplement793856794644Upstream
ABE-0002595acrZCDSforward794773794922Upstream
ABE-0002601modACDSforward795089795862Upstream
ABE-0002603modBCDSforward795862796551Upstream
ABE-0002605modCCDSforward796554797612Upstream
ABE-0002607ybhACDScomplement797613798431Upstream
ABE-0002611pglCDSforward798586799581Matches
ABE-0002613ybhDCDScomplement799622800575Downstream
ABE-0002618ybhHCDSforward800759801811Downstream
ABE-0002621ybhICDSforward801887803320Downstream
ABE-0002626ybhJCDSforward803503805764Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.