Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002635 (bioA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002635 showshow history
Names
bioA JW0757 ECK0763 b0774
Product
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 807968 809257 1290 430
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000312
EnteroFam0002635: Trusted threshold=1132.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005815 (IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA) Apr 2008
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF00202 (PF00202 Aminotransferase class-III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bioA Published Sequence Analysis - PubMed ID: 3058702
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym JW0757 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0763 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0774 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product adenosylmethionine-8-amino-7-oxononanoate aminotransferase Experimental - PubMed ID: 12379100
Reference: Escherichia coli 		Feb 2007
Person Uncurated alternate product name 7,8-diaminopelargonic acid synthetase, PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 7,8-diaminopelargonic acid aminotransferase Experimental - PubMed ID: 1092681
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name 7,8-diaminopelargonic acid synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name 7,8-diaminopelargonic acid (DAPA) synthase Experimental - PubMed ID: 10452893
Reference: Escherichia coli 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0002635: Trusted threshold=1132.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000312
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA Protein Sequence Similarity - InterPro Domain: IPR005815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00202 Aminotransferase class-III Protein Sequence Similarity - PFAM Model Name: PF00202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.6.1.62 Experimental - PubMed ID: 12379100
Reference: Escherichia coli 		Feb 2007
Automated Process Uncurated EC number 2.6.1.- Published Annotation - Database Name: EC2GO: GO:0008483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.1 (metabolism; building block biosynthesis; cofactor, small molecule carrier; biotin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P12995 Published Annotation - Swiss-Prot Accession Number: P12995 Jan 2005
Automated Process Approved db xref GeneID:945376 Published Annotation - Entrez Gene Database ID: 945376
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P12995 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786991 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10117 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002635 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Biotin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 7,8-diaminopelargonic acid synthetase; GO_process: GO:0009102 - biotin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73861.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000312 bioA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000612 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000342 bioA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000418 bioA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001440 bioA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000843 bioA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001274 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002684 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129562 bioA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104999 bioA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104401 bioA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001324 bioA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002924 bioA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001601 bioA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002120 bioA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007423 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020207 bioA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001589 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001784 bioA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299898 bioA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001353 bioA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002336 bioA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000112 bioA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009096 bioA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000795 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005737 bioA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000679 bioA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003593 bioA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008777 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009837 bioA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008823 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076944 bioA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000772 bioA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000998 bioA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010605 bioA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000768 bioA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005283 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001980 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009624 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008673 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005940 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008424 bioA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005762 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009013 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009499 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009039 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006709 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008984 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008461 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007301 bioA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024816 bioA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009472 bioA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005507 bioA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001048 CDS
Automated Process Uncurated Go view Escherichia coli K-12 DH10B AEC-0004431 bioA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000781 bioA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001086 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001028 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000939 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000853 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174941 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0000851 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000796 bioA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130765 bioA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005506 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000774 bioA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000834 bioA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003675 bioA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000801 bioA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003689 bioA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007266 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000508 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000685 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000552 bioA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003659 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001266 bioA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003008 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008922 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002934 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287536 bioA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004354 bioA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063099 bioA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004107 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000729 bioA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004389 bioA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006280 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140146 bioA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005153 bioA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005007 bioA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002243 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000946 bioA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005162 bioA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002505 bioA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002426 bioA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008099 bioA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005285 bioA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004642 bioA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007242 bioA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005203 bioA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004411 bioA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005227 bioA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007752 bioA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001971 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001959 bioA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002739 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005514 bioA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005843 bioA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005032 bioA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006055 bioA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106913 bioA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083808 bioA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000921 bioA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092930 bioA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008647 bioA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006418 bioA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008498 bioA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004542 bioA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266338 bioA CDS
Person Approved Go view Shigella boydii 227 ADV-0000722 bioA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007989 bioA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007933 bioA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000937 bioA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071765 bioA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087081 bioA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000800 bioA CDS
Person Approved Go view Shigella sonnei 046 ADD-0000813 bioA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001179 VC1111 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000632 bioA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002553 bioA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002403 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008393 bioA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002328 bioA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003399 bioA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002895 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236601 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005534 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001287 bioA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005214 bioA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002217 bioA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119030 bioA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008054 bioA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004793 bioA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003501 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007662 bioA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005371 bioA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032779 bioA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005487 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003426 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003059 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006335 bioA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006835 bioA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001249 bioA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001490 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003482 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010429 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004622 bioA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 802968 to 814257
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002621ybhICDSforward801887803320Downstream
ABE-0002626ybhJCDSforward803503805764Downstream
ABE-0285399repeat_regionforward805804805981Downstream
ABE-0002629ybhCCDScomplement805998807281Downstream
ABE-0285142attLAMmisc_featureforward807328807342Downstream
ABE-0002632ybhBCDScomplement807433807909Downstream
ABE-0002635bioACDScomplement807968809257Matches
ABE-0002644bioBCDSforward809344810384Upstream
ABE-0002646bioFCDSforward810381811535Upstream
ABE-0002648bioCCDSforward811522812277Upstream
ABE-0002650bioDCDSforward812270812947Upstream
ABE-0285269DARS1misc_featureforward813086813186Upstream
ABE-0285270protein_bindforward813107813115Upstream
ABE-0285271protein_bindcomplement813121813129Upstream
ABE-0285272protein_bindcomplement813133813141Upstream
ABE-0002658uvrBCDSforward813526815547Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.