Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002644 (bioB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002644 showshow history
Names
bioB JW0758 ECK0764 b0775
Product
biotin synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 809344 810384 1041 347
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000313
EnteroFam0002644: Trusted threshold=1000.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002684 (IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB) Apr 2008
Automated Process Approved IPR006638 (IPR006638 Elp3/MiaB/NifB) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Apr 2008
Automated Process Approved IPR010722 (IPR010722 Biotin and thiamin synthesis-associated domain) Apr 2008
Automated Process Approved PF04055 (PF04055 Radical SAM superfamily) Jul 2018
Automated Process Approved PF06968 (PF06968 Biotin and Thiamin Synthesis associated domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004076 biotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bioB Published Sequence Analysis - PubMed ID: 3058702
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym ECK0764 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW0758 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0775 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product biotin synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name biotin synthetase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0002644: Trusted threshold=1000.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000313
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB Protein Sequence Similarity - InterPro Domain: IPR002684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010722 Biotin and thiamin synthesis-associated domain Protein Sequence Similarity - InterPro Domain: IPR010722
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04055 Radical SAM superfamily Protein Sequence Similarity - PFAM Model Name: PF04055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF06968 Biotin and Thiamin Synthesis associated domain Protein Sequence Similarity - PFAM Model Name: PF06968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006638 Elp3/MiaB/NifB Protein Sequence Similarity - InterPro Domain: IPR006638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.8.1.6 Published Annotation - Swiss-Prot Accession Number: P12996 Feb 2006
Person Uncurated MultiFun 1.5.3.1 (metabolism; building block biosynthesis; cofactor, small molecule carrier; biotin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P12996 Published Annotation - Swiss-Prot Accession Number: P12996 Jan 2005
Automated Process Approved db xref GeneID:945370 Published Annotation - Entrez Gene Database ID: 945370
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786992 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P12996 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002644 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10118 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Biotin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note biotin synthesis, sulfur insertion?; GO_process: GO:0009102 - biotin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73862.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004076 biotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002684
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000313 bioB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000611 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000392 bioB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000657 bioB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001266 bioB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000844 bioB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001275 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002683 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129561 bioB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104998 bioB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104400 bioB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001325 bioB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002923 bioB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001602 bioB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002121 bioB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007422 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020208 bioB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001590 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001785 bioB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299901 bioB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001354 bioB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002335 bioB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000111 bioB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009095 bioB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000796 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005736 bioB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000680 bioB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003592 bioB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008776 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009838 bioB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008822 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076946 bioB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000773 bioB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000999 bioB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010606 bioB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000769 bioB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005284 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001981 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009625 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008674 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005941 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008425 bioB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005763 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009012 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009500 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009040 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008985 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008460 bioB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007302 bioB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024817 bioB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009473 bioB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005508 bioB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001049 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000743 bioB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000782 bioB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001085 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001029 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000938 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000855 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174942 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000852 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000797 bioB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130766 bioB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005507 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000775 bioB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000835 bioB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003674 bioB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000802 bioB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003690 bioB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007265 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000509 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000686 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000553 bioB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003658 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001267 bioB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003007 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008923 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002935 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287535 bioB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004355 bioB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063098 bioB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001648 bioB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001927 bioB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004390 bioB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006281 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140149 bioB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000496 bioB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005008 bioB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002242 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000947 bioB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005163 bioB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002508 bioB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002429 bioB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008098 bioB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005286 bioB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004643 bioB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007243 bioB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005204 bioB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004412 bioB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005228 bioB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007753 bioB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001970 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001958 bioB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002738 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005515 bioB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005842 bioB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005033 bioB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006056 bioB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106916 bioB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083807 bioB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000922 bioB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092940 bioB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008646 bioB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006417 bioB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008499 bioB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004541 bioB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266337 bioB CDS
Person Approved Go view Shigella boydii 227 ADV-0000723 bioB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007988 bioB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007934 bioB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000936 bioB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071766 bioB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087082 bioB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000801 bioB CDS
Person Approved Go view Shigella sonnei 046 ADD-0000814 bioB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001180 VC1112 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000633 bioB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002556 bioB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002402 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008390 bioB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002327 bioB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003400 bioB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002894 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236599 bioB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005535 bioB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001288 bioB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005215 bioB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002216 bioB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119033 bioB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008055 bioB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004792 bioB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002999 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007663 bioB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005370 bioB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032778 bioB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005486 bioB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003425 bioB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003058 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006334 bioB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006834 bioB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001250 bioB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001491 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003481 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010435 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004621 bioB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 804344 to 815384
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002626ybhJCDSforward803503805764Upstream
ABE-0285399repeat_regionforward805804805981Upstream
ABE-0002629ybhCCDScomplement805998807281Upstream
ABE-0285142attLAMmisc_featureforward807328807342Upstream
ABE-0002632ybhBCDScomplement807433807909Upstream
ABE-0002635bioACDScomplement807968809257Upstream
ABE-0002644bioBCDSforward809344810384Matches
ABE-0002646bioFCDSforward810381811535Overlaps Downstream
ABE-0002648bioCCDSforward811522812277Downstream
ABE-0002650bioDCDSforward812270812947Downstream
ABE-0285269DARS1misc_featureforward813086813186Downstream
ABE-0285270protein_bindforward813107813115Downstream
ABE-0285271protein_bindcomplement813121813129Downstream
ABE-0285272protein_bindcomplement813133813141Downstream
ABE-0002658uvrBCDSforward813526815547Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.