Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002646 (bioF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002646 showshow history
Names
bioF JW0759 ECK0765 b0776
Product
8-amino-7-oxononanoate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 810381 811535 1155 385
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000314
EnteroFam0002646: Trusted threshold=913.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Apr 2008
Automated Process Approved IPR004723 (IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type) Apr 2008
Automated Process Approved IPR001917 (IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF00155 (PF00155 Aminotransferase class I and II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008710 8-amino-7-oxononanoate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bioF Published Sequence Analysis - PubMed ID: 3058702
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym JW0759 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0765 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0776 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 8-amino-7-oxononanoate synthase Experimental - PubMed ID: 9813126
Reference: Escherichia coli 		Feb 2007
Person Uncurated alternate product name 7-keto-8-aminopelargonic acid synthetase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name 7-keto-8-aminopelargonate synthase Experimental - PubMed ID: 10642176
Reference: Escherichia coli 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0002646: Trusted threshold=913.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000314
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00155 Aminotransferase class I and II Protein Sequence Similarity - PFAM Model Name: PF00155
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type Protein Sequence Similarity - InterPro Domain: IPR004723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Protein Sequence Similarity - InterPro Domain: IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.1.47 Experimental - PubMed ID: 9813126
Reference: Escherichia coli 		Feb 2007
Person Uncurated MultiFun 1.5.3.1 (metabolism; building block biosynthesis; cofactor, small molecule carrier; biotin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002646 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10121 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1786993 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P12998 Published Annotation - Swiss-Prot Accession Number: P12998 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P12998 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945384 Published Annotation - Entrez Gene Database ID: 945384
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Biotin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009102 - biotin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73863.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001917
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008710 8-amino-7-oxononanoate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004723
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000314 bioF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000610 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000657 bioF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001175 bioF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001858 bioF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001366 bioF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001276 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002682 CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104997 bioF CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001326 bioF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002922 bioF CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001603 bioF_1 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002122 bioF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007421 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020209 bioF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001591 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001786 bioF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299904 bioF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001355 bioF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002334 bioF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000110 bioF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009094 bioF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000797 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005735 bioF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000681 bioF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003591 bioF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008775 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009839 bioF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008821 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076947 bioF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000774 bioF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001000 bioF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008092 bioF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010607 bioF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000770 bioF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005285 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001982 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009626 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008675 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005942 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008426 bioF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005764 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009011 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009501 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009041 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008986 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008459 bioF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007303 bioF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024818 bioF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009474 bioF_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005509 bioF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001050 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000744 bioF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000783 bioF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001084 bioF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001030 bioF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000937 bioF CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000856 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000853 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000798 bioF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130767 bioF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005508 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000776 bioF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000836 bioF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000803 bioF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003691 bioF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007264 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000510 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000687 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000554 bioF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003657 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001268 bioF CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003006 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008924 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002936 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287534 bioF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004356 bioF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063097 bioF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001655 bioF CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001926 bioF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004391 bioF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006282 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140150 bioF CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000497 bioF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005009 bioF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002241 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000948 bioF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005164 bioF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002512 bioF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002432 bioF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008097 bioF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005287 bioF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004644 bioF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007244 bioF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005205 bioF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004413 bioF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005229 bioF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007754 bioF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001969 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001957 bioF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002737 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005516 bioF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005841 bioF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005034 bioF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006057 bioF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106919 bioF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083806 bioF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000923 bioF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092943 bioF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008645 bioF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006416 bioF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008500 bioF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004540 bioF CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266336 bioF CDS
Person Approved Go view Shigella boydii 227 ADV-0000724 bioF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007987 bioF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007935 bioF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000935 bioF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071767 bioF CDS
Person Approved Go view Shigella flexneri 301 ABT-0087083 bioF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000802 bioF CDS
Person Approved Go view Shigella sonnei 046 ADD-0000815 bioF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001181 VC1113 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000634 bioF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002558 bioF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002401 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008387 bioF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002326 bioF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003401 bioF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002893 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236598 bioF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005536 bioF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001289 bioF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005216 bioF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002215 bioF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119035 bioF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008056 bioF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004791 bioF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003000 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007664 bioF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005369 bioF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032777 bioF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005485 bioF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003424 bioF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003057 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006333 bioF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006833 bioF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001251 bioF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001492 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003480 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010440 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004620 bioF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 805381 to 816535
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002626ybhJCDSforward803503805764Upstream
ABE-0285399repeat_regionforward805804805981Upstream
ABE-0002629ybhCCDScomplement805998807281Upstream
ABE-0285142attLAMmisc_featureforward807328807342Upstream
ABE-0002632ybhBCDScomplement807433807909Upstream
ABE-0002635bioACDScomplement807968809257Upstream
ABE-0002644bioBCDSforward809344810384Overlaps Upstream
ABE-0002646bioFCDSforward810381811535Matches
ABE-0002648bioCCDSforward811522812277Overlaps Downstream
ABE-0002650bioDCDSforward812270812947Downstream
ABE-0285269DARS1misc_featureforward813086813186Downstream
ABE-0285270protein_bindforward813107813115Downstream
ABE-0285271protein_bindcomplement813121813129Downstream
ABE-0285272protein_bindcomplement813133813141Downstream
ABE-0002658uvrBCDSforward813526815547Downstream
ABE-0285400repeat_regionforward815585815681Downstream
ABE-0002661ybhKCDScomplement815739816647Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.