Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0002650 (bioD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0002650 showshow history
Names
bioD JW0761 ECK0767 b0778
Product
dethiobiotin synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 812270 812947 678 226
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000316
EnteroFam0002650: Trusted threshold=548.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002586 (IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain) Apr 2008
Automated Process Approved IPR004472 (IPR004472 Dethiobiotin synthase BioD) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF13500 (PF13500 AAA domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019351 dethiobiotin biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 4900015
Reference: Escherichia coli K-12 		Feb 2007
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004472
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0004141 dethiobiotin synthase activity GO Inferred from Mutant Phenotype - PubMed ID: 4900015
Reference: Escherichia coli K-12 		Feb 2007
Automated Process Approved GO molecular function GO:0042242 cobyrinic acid a,c-diamide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004141 dethiobiotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bioD Published Sequence Analysis - PubMed ID: 3058702
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym JW0761 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK0767 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b0778 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dethiobiotin synthetase Experimental - PubMed ID: 4921568
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name DTB synthetase Experimental - PubMed ID: 9125495
Reference: Escherichia coli 		Feb 2007
Protein Family
Person Approved EnteroFam EnteroFam0002650: Trusted threshold=548.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000316
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13500 AAA domain Protein Sequence Similarity - PFAM Model Name: PF13500
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004472 Dethiobiotin synthase BioD Protein Sequence Similarity - InterPro Domain: IPR004472
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Protein Sequence Similarity - InterPro Domain: IPR002586
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.3.3.3 Experimental - PubMed ID: 7669755
Reference: Escherichia coli 		Feb 2007
Person Uncurated MultiFun 1.5.3.1 (metabolism; building block biosynthesis; cofactor, small molecule carrier; biotin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10120 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P13000 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0002650 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945387 Published Annotation - Entrez Gene Database ID: 945387
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1786995 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P13000 Published Annotation - Swiss-Prot Accession Number: P13000 Jan 2005
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Biotin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009102 - biotin biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC73865.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019351 dethiobiotin biosynthetic process GO Inferred from Mutant Phenotype - PubMed ID: 4900015
Reference: Escherichia coli K-12 		Feb 2007
Person Approved GO biological process GO:0009102 biotin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO molecular function GO:0004141 dethiobiotin synthase activity GO Inferred from Mutant Phenotype - PubMed ID: 4900015
Reference: Escherichia coli K-12 		Feb 2007
Automated Process Approved GO molecular function GO:0004141 dethiobiotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004472
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0042242 cobyrinic acid a,c-diamide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000316 bioD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000608 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001535 bioD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001316 bioD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001128 bioD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001050 bioD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001278 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002680 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129560 bioD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104995 bioD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001328 bioD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002920 bioD CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0001605 bioD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007419 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020212 bioD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001593 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001788 bioD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299913 bioD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001357 bioD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002332 bioD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000108 bioD1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000799 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005733 bioD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000683 bioD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0003589 bioD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0008773 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008819 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076949 bioD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0000776 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001002 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0000772 bioD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005287 bioD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001984 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009628 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008677 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005944 bioD1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0005766 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009009 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009043 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006713 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007305 bioD1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024820 bioD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009476 bioD1_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005511 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001052 bioD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0000746 bioD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0000785 bioD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001082 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001032 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0000935 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0000858 bioD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0174945 bioD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0000855 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0000800 bioD1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0130769 bioD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005510 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000778 bioD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000838 bioD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000805 bioD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003693 bioD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007262 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0000512 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000689 bioD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000556 bioD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003655 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001270 bioD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003004 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008926 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002938 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287532 bioD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004358 bioD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063095 bioD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004108 bioD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003691 bioD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004393 bioD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006284 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140154 bioD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000500 bioD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005011 bioD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002239 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000950 bioD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005166 bioD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002517 bioD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002437 bioD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008095 bioD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005289 bioD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004646 bioD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007246 bioD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005207 bioD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004415 bioD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005231 bioD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007756 bioD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001967 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001955 bioD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002735 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005518 bioD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005839 bioD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005036 bioD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006059 bioD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0106924 bioD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083804 bioD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0000925 bioD_1 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092949 bioD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008643 bioD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006414 bioD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004538 bioD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266334 bioD CDS
Person Approved Go view Shigella boydii 227 ADV-0000726 bioD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007985 bioD1 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0000933 bioD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0071769 bioD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087085 bioD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000804 bioD CDS
Person Approved Go view Shigella sonnei 046 ADD-0000817 bioD CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000636 bioD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002560 bioD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002399 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008380 bioD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002324 bioD1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003403 bioD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002891 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236596 bioD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005538 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001291 bioD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005218 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002213 bioD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119039 bioD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008058 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004789 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003002 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007666 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005367 bioD2 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032775 bioD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005483 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003422 bioD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003055 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006331 bioD2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006831 bioD2 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001253 bioD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001494 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003478 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0010449 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004618 bioD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 807270 to 817947
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0002629ybhCCDScomplement805998807281Upstream
ABE-0285142attLAMmisc_featureforward807328807342Upstream
ABE-0002632ybhBCDScomplement807433807909Upstream
ABE-0002635bioACDScomplement807968809257Upstream
ABE-0002644bioBCDSforward809344810384Upstream
ABE-0002646bioFCDSforward810381811535Upstream
ABE-0002648bioCCDSforward811522812277Overlaps Upstream
ABE-0002650bioDCDSforward812270812947Matches
ABE-0285269DARS1misc_featureforward813086813186Downstream
ABE-0285270protein_bindforward813107813115Downstream
ABE-0285271protein_bindcomplement813121813129Downstream
ABE-0285272protein_bindcomplement813133813141Downstream
ABE-0002658uvrBCDSforward813526815547Downstream
ABE-0285400repeat_regionforward815585815681Downstream
ABE-0002661ybhKCDScomplement815739816647Downstream
ABE-0002669moaACDSforward817044818033Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.